Hb_024404_030

Information

Type -
Description -
Location Contig24404: 13791-17287
Sequence    

Annotation

kegg
ID rcu:RCOM_0871480
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012065345.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g14580, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9LUD6
description Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1
trembl
ID A0A067L951
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024404_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14580, mitochondrial-like [Jatropha curcas]
2 Hb_003544_110 0.1084049247 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
3 Hb_140506_010 0.1099588919 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
4 Hb_000140_230 0.1139381529 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
5 Hb_012564_030 0.1154775663 - - coronatine-insensitive 1 [Hevea brasiliensis]
6 Hb_001818_070 0.1212281465 - - carbon catabolite repressor protein, putative [Ricinus communis]
7 Hb_000175_220 0.1215364453 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
8 Hb_048219_010 0.1218879553 - - coronatine-insensitive 1 [Hevea brasiliensis]
9 Hb_004767_050 0.1231080637 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
10 Hb_001856_230 0.1281946437 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
11 Hb_002783_040 0.1296250621 transcription factor TF Family: IWS1 -
12 Hb_005541_010 0.1306974922 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
13 Hb_003467_020 0.1307016737 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
14 Hb_002263_040 0.1309356355 - - carbon catabolite repressor protein, putative [Ricinus communis]
15 Hb_005675_040 0.1319838844 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
16 Hb_003938_190 0.1324432586 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Jatropha curcas]
17 Hb_001366_310 0.1337279941 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
18 Hb_008775_040 0.1340310679 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
19 Hb_021576_110 0.1343472509 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
20 Hb_000334_220 0.1348351032 - - hypothetical protein JCGZ_16772 [Jatropha curcas]

Gene co-expression network

sample Hb_024404_030 Hb_024404_030 Hb_003544_110 Hb_003544_110 Hb_024404_030--Hb_003544_110 Hb_140506_010 Hb_140506_010 Hb_024404_030--Hb_140506_010 Hb_000140_230 Hb_000140_230 Hb_024404_030--Hb_000140_230 Hb_012564_030 Hb_012564_030 Hb_024404_030--Hb_012564_030 Hb_001818_070 Hb_001818_070 Hb_024404_030--Hb_001818_070 Hb_000175_220 Hb_000175_220 Hb_024404_030--Hb_000175_220 Hb_001366_310 Hb_001366_310 Hb_003544_110--Hb_001366_310 Hb_003544_110--Hb_012564_030 Hb_002818_030 Hb_002818_030 Hb_003544_110--Hb_002818_030 Hb_003494_020 Hb_003494_020 Hb_003544_110--Hb_003494_020 Hb_004916_010 Hb_004916_010 Hb_003544_110--Hb_004916_010 Hb_048219_010 Hb_048219_010 Hb_003544_110--Hb_048219_010 Hb_140506_010--Hb_001818_070 Hb_005541_010 Hb_005541_010 Hb_140506_010--Hb_005541_010 Hb_021576_110 Hb_021576_110 Hb_140506_010--Hb_021576_110 Hb_000049_260 Hb_000049_260 Hb_140506_010--Hb_000049_260 Hb_000125_170 Hb_000125_170 Hb_140506_010--Hb_000125_170 Hb_004767_050 Hb_004767_050 Hb_140506_010--Hb_004767_050 Hb_000264_320 Hb_000264_320 Hb_000140_230--Hb_000264_320 Hb_003020_050 Hb_003020_050 Hb_000140_230--Hb_003020_050 Hb_002316_150 Hb_002316_150 Hb_000140_230--Hb_002316_150 Hb_168697_010 Hb_168697_010 Hb_000140_230--Hb_168697_010 Hb_008775_040 Hb_008775_040 Hb_000140_230--Hb_008775_040 Hb_000140_230--Hb_048219_010 Hb_012564_030--Hb_048219_010 Hb_001856_230 Hb_001856_230 Hb_012564_030--Hb_001856_230 Hb_005016_160 Hb_005016_160 Hb_012564_030--Hb_005016_160 Hb_000331_670 Hb_000331_670 Hb_012564_030--Hb_000331_670 Hb_012055_060 Hb_012055_060 Hb_012564_030--Hb_012055_060 Hb_001838_060 Hb_001838_060 Hb_001818_070--Hb_001838_060 Hb_011491_010 Hb_011491_010 Hb_001818_070--Hb_011491_010 Hb_001818_070--Hb_004767_050 Hb_003211_020 Hb_003211_020 Hb_001818_070--Hb_003211_020 Hb_001818_070--Hb_048219_010 Hb_000175_220--Hb_008775_040 Hb_000175_220--Hb_000264_320 Hb_000175_220--Hb_004767_050 Hb_002636_100 Hb_002636_100 Hb_000175_220--Hb_002636_100 Hb_001123_290 Hb_001123_290 Hb_000175_220--Hb_001123_290 Hb_001828_130 Hb_001828_130 Hb_000175_220--Hb_001828_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3718 3.02261 1.1248 1.20062 1.05896 2.11945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.381268 1.88143 2.399 0.86096 1.13635

CAGE analysis