Hb_023313_010

Information

Type -
Description -
Location Contig23313: 22993-33493
Sequence    

Annotation

kegg
ID rcu:RCOM_1016730
description cytochrome P450, putative (EC:4.2.1.92)
nr
ID XP_012080610.1
description PREDICTED: linolenate hydroperoxide lyase, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZSY9
description Linolenate hydroperoxide lyase, chloroplastic OS=Arabidopsis thaliana GN=CYP74B2 PE=1 SV=1
trembl
ID A0A067K3J7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13719 PE=4 SV=1
Gene Ontology
ID GO:0004497
description allene oxide chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24489: 23064-33501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023313_010 0.0 - - PREDICTED: linolenate hydroperoxide lyase, chloroplastic [Jatropha curcas]
2 Hb_011671_460 0.1406799439 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
3 Hb_000617_200 0.1492596399 - - f-actin capping protein alpha, putative [Ricinus communis]
4 Hb_008725_170 0.1543092674 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
5 Hb_000027_260 0.1582319604 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
6 Hb_034013_020 0.1582971164 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
7 Hb_002503_020 0.1607700422 - - Phosphatase 2C family protein, putative [Theobroma cacao]
8 Hb_000853_190 0.1618410946 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_019113_020 0.1635711503 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
10 Hb_000997_360 0.1645065735 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
11 Hb_004679_050 0.1648741743 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
12 Hb_161175_010 0.1648865635 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
13 Hb_000125_210 0.1664912924 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
14 Hb_146680_010 0.1672787968 - - hypothetical protein JCGZ_15486 [Jatropha curcas]
15 Hb_001946_330 0.16730316 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
16 Hb_003052_050 0.1681458181 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
17 Hb_008566_030 0.1690599294 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
18 Hb_004128_070 0.1696898435 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
19 Hb_011512_040 0.1700707249 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
20 Hb_000615_050 0.1701986484 - - Potassium transporter 11 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_023313_010 Hb_023313_010 Hb_011671_460 Hb_011671_460 Hb_023313_010--Hb_011671_460 Hb_000617_200 Hb_000617_200 Hb_023313_010--Hb_000617_200 Hb_008725_170 Hb_008725_170 Hb_023313_010--Hb_008725_170 Hb_000027_260 Hb_000027_260 Hb_023313_010--Hb_000027_260 Hb_034013_020 Hb_034013_020 Hb_023313_010--Hb_034013_020 Hb_002503_020 Hb_002503_020 Hb_023313_010--Hb_002503_020 Hb_000934_190 Hb_000934_190 Hb_011671_460--Hb_000934_190 Hb_011671_450 Hb_011671_450 Hb_011671_460--Hb_011671_450 Hb_000096_150 Hb_000096_150 Hb_011671_460--Hb_000096_150 Hb_000673_020 Hb_000673_020 Hb_011671_460--Hb_000673_020 Hb_000125_210 Hb_000125_210 Hb_011671_460--Hb_000125_210 Hb_003622_040 Hb_003622_040 Hb_011671_460--Hb_003622_040 Hb_000329_210 Hb_000329_210 Hb_000617_200--Hb_000329_210 Hb_003050_250 Hb_003050_250 Hb_000617_200--Hb_003050_250 Hb_019113_020 Hb_019113_020 Hb_000617_200--Hb_019113_020 Hb_161175_010 Hb_161175_010 Hb_000617_200--Hb_161175_010 Hb_000617_200--Hb_002503_020 Hb_006442_020 Hb_006442_020 Hb_000617_200--Hb_006442_020 Hb_006816_470 Hb_006816_470 Hb_008725_170--Hb_006816_470 Hb_000020_120 Hb_000020_120 Hb_008725_170--Hb_000020_120 Hb_000406_130 Hb_000406_130 Hb_008725_170--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_008725_170--Hb_007416_060 Hb_000479_140 Hb_000479_140 Hb_008725_170--Hb_000479_140 Hb_003086_080 Hb_003086_080 Hb_008725_170--Hb_003086_080 Hb_000096_140 Hb_000096_140 Hb_000027_260--Hb_000096_140 Hb_000454_090 Hb_000454_090 Hb_000027_260--Hb_000454_090 Hb_032202_040 Hb_032202_040 Hb_000027_260--Hb_032202_040 Hb_007533_040 Hb_007533_040 Hb_000027_260--Hb_007533_040 Hb_005601_040 Hb_005601_040 Hb_000027_260--Hb_005601_040 Hb_004108_160 Hb_004108_160 Hb_000027_260--Hb_004108_160 Hb_005162_070 Hb_005162_070 Hb_034013_020--Hb_005162_070 Hb_001946_330 Hb_001946_330 Hb_034013_020--Hb_001946_330 Hb_001898_160 Hb_001898_160 Hb_034013_020--Hb_001898_160 Hb_015198_020 Hb_015198_020 Hb_034013_020--Hb_015198_020 Hb_002027_040 Hb_002027_040 Hb_034013_020--Hb_002027_040 Hb_002799_110 Hb_002799_110 Hb_034013_020--Hb_002799_110 Hb_002503_020--Hb_019113_020 Hb_002503_020--Hb_000125_210 Hb_002503_020--Hb_161175_010 Hb_000733_180 Hb_000733_180 Hb_002503_020--Hb_000733_180 Hb_000853_190 Hb_000853_190 Hb_002503_020--Hb_000853_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.94549 15.5566 26.8502 30.4658 22.1218 9.15919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.5813 37.2986 81.3517 17.8322 68.0034

CAGE analysis