Hb_011431_010

Information

Type -
Description -
Location Contig11431: 3916-20570
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011431_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000376_160 0.1144360367 - - -
3 Hb_007904_090 0.174272624 - - PREDICTED: uncharacterized protein LOC100261196 [Vitis vinifera]
4 Hb_000438_170 0.2114134551 - - -
5 Hb_008078_030 0.2261432519 - - -
6 Hb_000710_010 0.2282376406 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
7 Hb_018599_010 0.2284253062 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
8 Hb_001195_330 0.2301217642 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005545_030 0.2413471847 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
10 Hb_000023_200 0.2432507505 - - hypothetical protein POPTR_0018s02910g [Populus trichocarpa]
11 Hb_002681_040 0.2457388241 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
12 Hb_006198_110 0.2476127461 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
13 Hb_002685_180 0.2477342825 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_003018_110 0.2528015766 - - -
15 Hb_001158_040 0.2576459367 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
16 Hb_006788_160 0.2576669908 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
17 Hb_003185_080 0.2586325244 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
18 Hb_006816_220 0.2587610391 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
19 Hb_000123_230 0.2589048842 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002374_280 0.2600665166 - - -

Gene co-expression network

sample Hb_011431_010 Hb_011431_010 Hb_000376_160 Hb_000376_160 Hb_011431_010--Hb_000376_160 Hb_007904_090 Hb_007904_090 Hb_011431_010--Hb_007904_090 Hb_000438_170 Hb_000438_170 Hb_011431_010--Hb_000438_170 Hb_008078_030 Hb_008078_030 Hb_011431_010--Hb_008078_030 Hb_000710_010 Hb_000710_010 Hb_011431_010--Hb_000710_010 Hb_018599_010 Hb_018599_010 Hb_011431_010--Hb_018599_010 Hb_000376_160--Hb_007904_090 Hb_000376_160--Hb_000438_170 Hb_000376_160--Hb_008078_030 Hb_127008_010 Hb_127008_010 Hb_000376_160--Hb_127008_010 Hb_002685_180 Hb_002685_180 Hb_000376_160--Hb_002685_180 Hb_068804_150 Hb_068804_150 Hb_007904_090--Hb_068804_150 Hb_007904_090--Hb_002685_180 Hb_000175_040 Hb_000175_040 Hb_007904_090--Hb_000175_040 Hb_007904_090--Hb_008078_030 Hb_000462_140 Hb_000462_140 Hb_000438_170--Hb_000462_140 Hb_000789_090 Hb_000789_090 Hb_000438_170--Hb_000789_090 Hb_000109_090 Hb_000109_090 Hb_000438_170--Hb_000109_090 Hb_002284_090 Hb_002284_090 Hb_000438_170--Hb_002284_090 Hb_000438_170--Hb_000710_010 Hb_028347_010 Hb_028347_010 Hb_000438_170--Hb_028347_010 Hb_011161_070 Hb_011161_070 Hb_008078_030--Hb_011161_070 Hb_003029_080 Hb_003029_080 Hb_008078_030--Hb_003029_080 Hb_142522_010 Hb_142522_010 Hb_008078_030--Hb_142522_010 Hb_001811_040 Hb_001811_040 Hb_008078_030--Hb_001811_040 Hb_145761_010 Hb_145761_010 Hb_008078_030--Hb_145761_010 Hb_000221_100 Hb_000221_100 Hb_008078_030--Hb_000221_100 Hb_021576_040 Hb_021576_040 Hb_000710_010--Hb_021576_040 Hb_002234_140 Hb_002234_140 Hb_000710_010--Hb_002234_140 Hb_001427_050 Hb_001427_050 Hb_000710_010--Hb_001427_050 Hb_008112_040 Hb_008112_040 Hb_000710_010--Hb_008112_040 Hb_003687_230 Hb_003687_230 Hb_000710_010--Hb_003687_230 Hb_018599_010--Hb_000710_010 Hb_031403_020 Hb_031403_020 Hb_018599_010--Hb_031403_020 Hb_007778_020 Hb_007778_020 Hb_018599_010--Hb_007778_020 Hb_014720_170 Hb_014720_170 Hb_018599_010--Hb_014720_170 Hb_018599_010--Hb_001427_050 Hb_002374_280 Hb_002374_280 Hb_018599_010--Hb_002374_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.327771 0.0954683 0.0541996 0.0280546 0.150594 0.049447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.263041 0.271255 0 0.0452064 0.122634

CAGE analysis