Hb_006636_010

Information

Type -
Description -
Location Contig6636: 16983-18757
Sequence    

Annotation

kegg
ID egr:104438017
description hypothetical protein
nr
ID XP_012077076.1
description PREDICTED: uncharacterized protein LOC105637987 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07506 PE=4 SV=1
Gene Ontology
ID GO:0005829
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006636_010 0.0 - - PREDICTED: uncharacterized protein LOC105637987 [Jatropha curcas]
2 Hb_038237_010 0.1415012242 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
3 Hb_000106_140 0.1444123724 - - -
4 Hb_003940_040 0.1509691346 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005914_080 0.1566885204 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
6 Hb_000009_240 0.1594549063 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
7 Hb_005143_040 0.1629098914 - - hypothetical protein JCGZ_17315 [Jatropha curcas]
8 Hb_000155_110 0.1668185883 - - Auxin response factor, putative [Ricinus communis]
9 Hb_000521_270 0.1671462075 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
10 Hb_098852_010 0.1673506886 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
11 Hb_145629_010 0.1683213953 - - -
12 Hb_041205_010 0.1691432342 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000023_280 0.1715882498 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
14 Hb_002110_040 0.1727501623 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
15 Hb_001969_080 0.1743463063 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
16 Hb_033501_010 0.1743512506 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
17 Hb_000421_210 0.175385274 - - conserved hypothetical protein [Ricinus communis]
18 Hb_021238_050 0.17753111 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002391_270 0.177701838 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
20 Hb_099878_030 0.1778032181 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_006636_010 Hb_006636_010 Hb_038237_010 Hb_038237_010 Hb_006636_010--Hb_038237_010 Hb_000106_140 Hb_000106_140 Hb_006636_010--Hb_000106_140 Hb_003940_040 Hb_003940_040 Hb_006636_010--Hb_003940_040 Hb_005914_080 Hb_005914_080 Hb_006636_010--Hb_005914_080 Hb_000009_240 Hb_000009_240 Hb_006636_010--Hb_000009_240 Hb_005143_040 Hb_005143_040 Hb_006636_010--Hb_005143_040 Hb_152554_010 Hb_152554_010 Hb_038237_010--Hb_152554_010 Hb_000825_030 Hb_000825_030 Hb_038237_010--Hb_000825_030 Hb_076875_020 Hb_076875_020 Hb_038237_010--Hb_076875_020 Hb_129672_010 Hb_129672_010 Hb_038237_010--Hb_129672_010 Hb_005527_020 Hb_005527_020 Hb_038237_010--Hb_005527_020 Hb_000676_080 Hb_000676_080 Hb_038237_010--Hb_000676_080 Hb_002983_050 Hb_002983_050 Hb_000106_140--Hb_002983_050 Hb_000106_140--Hb_000009_240 Hb_001969_080 Hb_001969_080 Hb_000106_140--Hb_001969_080 Hb_001377_510 Hb_001377_510 Hb_000106_140--Hb_001377_510 Hb_002391_270 Hb_002391_270 Hb_000106_140--Hb_002391_270 Hb_000106_140--Hb_005914_080 Hb_099878_030 Hb_099878_030 Hb_003940_040--Hb_099878_030 Hb_010142_030 Hb_010142_030 Hb_003940_040--Hb_010142_030 Hb_000392_190 Hb_000392_190 Hb_003940_040--Hb_000392_190 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_003940_040--Hb_000023_280 Hb_000140_280 Hb_000140_280 Hb_003940_040--Hb_000140_280 Hb_144528_010 Hb_144528_010 Hb_005914_080--Hb_144528_010 Hb_005914_080--Hb_000009_240 Hb_005731_120 Hb_005731_120 Hb_005914_080--Hb_005731_120 Hb_005914_080--Hb_000023_280 Hb_005188_080 Hb_005188_080 Hb_005914_080--Hb_005188_080 Hb_005914_080--Hb_003940_040 Hb_000318_290 Hb_000318_290 Hb_000009_240--Hb_000318_290 Hb_000009_240--Hb_002391_270 Hb_004767_100 Hb_004767_100 Hb_000009_240--Hb_004767_100 Hb_003777_310 Hb_003777_310 Hb_000009_240--Hb_003777_310 Hb_000009_240--Hb_003940_040 Hb_005143_040--Hb_000023_280 Hb_001215_040 Hb_001215_040 Hb_005143_040--Hb_001215_040 Hb_005143_040--Hb_005914_080 Hb_005143_040--Hb_002391_270 Hb_005054_290 Hb_005054_290 Hb_005143_040--Hb_005054_290 Hb_076693_030 Hb_076693_030 Hb_005143_040--Hb_076693_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9662 19.08 1.22371 48.3718 9.76257 40.1547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.5864 23.3683 17.6648 33.179 7.26378

CAGE analysis