Hb_006059_020

Information

Type -
Description -
Location Contig6059: 20151-21463
Sequence    

Annotation

kegg
ID rcu:RCOM_1502750
description transcription factor, putative
nr
ID XP_012090526.1
description PREDICTED: uncharacterized protein LOC105648672 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JI47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26324 PE=4 SV=1
Gene Ontology
ID GO:0006355
description PREDICTED: uncharacterized protein LOC105648672

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50754: 22045-25438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006059_020 0.0 - - PREDICTED: uncharacterized protein LOC105648672 [Jatropha curcas]
2 Hb_005345_010 0.1274626378 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
3 Hb_021576_030 0.1424151993 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
4 Hb_002872_050 0.1482639574 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
5 Hb_014834_130 0.1502035867 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
6 Hb_001946_140 0.1509067008 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
7 Hb_011689_120 0.1514552834 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
8 Hb_002540_080 0.1519787068 - - cysteine-type peptidase, putative [Ricinus communis]
9 Hb_000107_150 0.1520594251 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
10 Hb_001575_060 0.1526706962 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
11 Hb_003622_030 0.1555399803 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
12 Hb_000174_030 0.157879118 - - hypothetical protein RCOM_1077370 [Ricinus communis]
13 Hb_000035_240 0.1588150496 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001240_010 0.1620900143 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
15 Hb_001728_060 0.1624686953 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
16 Hb_001301_340 0.1627472631 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
17 Hb_000638_160 0.163593328 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
18 Hb_012799_170 0.1638483654 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
19 Hb_007534_050 0.1638677148 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000035_270 0.1639702302 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]

Gene co-expression network

sample Hb_006059_020 Hb_006059_020 Hb_005345_010 Hb_005345_010 Hb_006059_020--Hb_005345_010 Hb_021576_030 Hb_021576_030 Hb_006059_020--Hb_021576_030 Hb_002872_050 Hb_002872_050 Hb_006059_020--Hb_002872_050 Hb_014834_130 Hb_014834_130 Hb_006059_020--Hb_014834_130 Hb_001946_140 Hb_001946_140 Hb_006059_020--Hb_001946_140 Hb_011689_120 Hb_011689_120 Hb_006059_020--Hb_011689_120 Hb_003622_030 Hb_003622_030 Hb_005345_010--Hb_003622_030 Hb_014720_110 Hb_014720_110 Hb_005345_010--Hb_014720_110 Hb_000035_270 Hb_000035_270 Hb_005345_010--Hb_000035_270 Hb_003747_230 Hb_003747_230 Hb_005345_010--Hb_003747_230 Hb_005345_010--Hb_002872_050 Hb_004125_040 Hb_004125_040 Hb_021576_030--Hb_004125_040 Hb_087749_010 Hb_087749_010 Hb_021576_030--Hb_087749_010 Hb_001491_010 Hb_001491_010 Hb_021576_030--Hb_001491_010 Hb_005847_060 Hb_005847_060 Hb_021576_030--Hb_005847_060 Hb_002613_020 Hb_002613_020 Hb_021576_030--Hb_002613_020 Hb_004871_040 Hb_004871_040 Hb_021576_030--Hb_004871_040 Hb_007827_010 Hb_007827_010 Hb_002872_050--Hb_007827_010 Hb_003050_280 Hb_003050_280 Hb_002872_050--Hb_003050_280 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_000107_150 Hb_000107_150 Hb_002872_050--Hb_000107_150 Hb_001318_260 Hb_001318_260 Hb_002872_050--Hb_001318_260 Hb_002872_050--Hb_011689_120 Hb_000638_160 Hb_000638_160 Hb_014834_130--Hb_000638_160 Hb_001712_020 Hb_001712_020 Hb_014834_130--Hb_001712_020 Hb_005846_030 Hb_005846_030 Hb_014834_130--Hb_005846_030 Hb_014834_130--Hb_011689_120 Hb_001301_340 Hb_001301_340 Hb_014834_130--Hb_001301_340 Hb_006846_150 Hb_006846_150 Hb_014834_130--Hb_006846_150 Hb_000035_240 Hb_000035_240 Hb_001946_140--Hb_000035_240 Hb_021650_040 Hb_021650_040 Hb_001946_140--Hb_021650_040 Hb_004440_020 Hb_004440_020 Hb_001946_140--Hb_004440_020 Hb_001946_140--Hb_001301_340 Hb_007534_050 Hb_007534_050 Hb_001946_140--Hb_007534_050 Hb_000163_100 Hb_000163_100 Hb_001946_140--Hb_000163_100 Hb_011689_120--Hb_006846_150 Hb_001322_110 Hb_001322_110 Hb_011689_120--Hb_001322_110 Hb_000403_070 Hb_000403_070 Hb_011689_120--Hb_000403_070 Hb_000811_070 Hb_000811_070 Hb_011689_120--Hb_000811_070 Hb_011689_120--Hb_001318_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0684388 0 0.166768 0.082672 0.0873329 0.0536473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139604 0.219532 0.0990425 0.0889379 0.219774

CAGE analysis