Hb_005424_070

Information

Type -
Description -
Location Contig5424: 84483-85049
Sequence    

Annotation

kegg
ID gmx:547805
description TBP1, STBP1, TBP; TATA-box binding protein
nr
ID XP_012082253.1
description PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
swissprot
ID Q42808
description TATA-box-binding protein OS=Glycine max GN=TBP1 PE=2 SV=1
trembl
ID A0A067LAC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09660 PE=3 SV=1
Gene Ontology
ID GO:0005634
description tata-box-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005424_070 0.0 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
2 Hb_000532_060 0.1695412172 - - copper-transporting atpase p-type, putative [Ricinus communis]
3 Hb_004586_380 0.1714372102 - - purine transporter, putative [Ricinus communis]
4 Hb_000940_020 0.1718125198 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
5 Hb_006351_080 0.1738430676 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
6 Hb_001691_190 0.1784359422 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002701_140 0.183275704 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
8 Hb_000170_230 0.1858749607 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
9 Hb_001373_080 0.1859864846 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_000417_290 0.1913527576 - - conserved hypothetical protein [Ricinus communis]
11 Hb_017417_030 0.1932463645 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
12 Hb_176149_010 0.1936950776 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
13 Hb_000128_010 0.1939188088 - - dimethylaniline monooxygenase, putative [Ricinus communis]
14 Hb_000825_040 0.1946982003 - - catalytic, putative [Ricinus communis]
15 Hb_029866_140 0.1990194329 - - PREDICTED: hevamine-A [Jatropha curcas]
16 Hb_000277_020 0.1992110845 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
17 Hb_002215_010 0.1994510278 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_003376_340 0.2006230452 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000345_190 0.2022700454 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
20 Hb_000627_140 0.2066329419 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005424_070 Hb_005424_070 Hb_000532_060 Hb_000532_060 Hb_005424_070--Hb_000532_060 Hb_004586_380 Hb_004586_380 Hb_005424_070--Hb_004586_380 Hb_000940_020 Hb_000940_020 Hb_005424_070--Hb_000940_020 Hb_006351_080 Hb_006351_080 Hb_005424_070--Hb_006351_080 Hb_001691_190 Hb_001691_190 Hb_005424_070--Hb_001691_190 Hb_002701_140 Hb_002701_140 Hb_005424_070--Hb_002701_140 Hb_000345_190 Hb_000345_190 Hb_000532_060--Hb_000345_190 Hb_000170_230 Hb_000170_230 Hb_000532_060--Hb_000170_230 Hb_046117_050 Hb_046117_050 Hb_000532_060--Hb_046117_050 Hb_003376_340 Hb_003376_340 Hb_000532_060--Hb_003376_340 Hb_150643_010 Hb_150643_010 Hb_000532_060--Hb_150643_010 Hb_001487_020 Hb_001487_020 Hb_000532_060--Hb_001487_020 Hb_004586_380--Hb_006351_080 Hb_176149_010 Hb_176149_010 Hb_004586_380--Hb_176149_010 Hb_000128_010 Hb_000128_010 Hb_004586_380--Hb_000128_010 Hb_004098_010 Hb_004098_010 Hb_004586_380--Hb_004098_010 Hb_000656_360 Hb_000656_360 Hb_004586_380--Hb_000656_360 Hb_119441_010 Hb_119441_010 Hb_004586_380--Hb_119441_010 Hb_000940_020--Hb_000345_190 Hb_000940_020--Hb_002701_140 Hb_001810_010 Hb_001810_010 Hb_000940_020--Hb_001810_010 Hb_000940_020--Hb_004586_380 Hb_029866_140 Hb_029866_140 Hb_000940_020--Hb_029866_140 Hb_000940_020--Hb_006351_080 Hb_006351_080--Hb_176149_010 Hb_006351_080--Hb_000128_010 Hb_001331_050 Hb_001331_050 Hb_006351_080--Hb_001331_050 Hb_006351_080--Hb_119441_010 Hb_045810_010 Hb_045810_010 Hb_006351_080--Hb_045810_010 Hb_001691_190--Hb_000170_230 Hb_131591_010 Hb_131591_010 Hb_001691_190--Hb_131591_010 Hb_000270_010 Hb_000270_010 Hb_001691_190--Hb_000270_010 Hb_001691_190--Hb_029866_140 Hb_001691_190--Hb_004586_380 Hb_133646_010 Hb_133646_010 Hb_001691_190--Hb_133646_010 Hb_004161_010 Hb_004161_010 Hb_002701_140--Hb_004161_010 Hb_000277_020 Hb_000277_020 Hb_002701_140--Hb_000277_020 Hb_000825_040 Hb_000825_040 Hb_002701_140--Hb_000825_040 Hb_003847_140 Hb_003847_140 Hb_002701_140--Hb_003847_140 Hb_002701_140--Hb_000656_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.3402 0.0360789 0.335303 0 0.0843857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109972 0 0 0.56908 0

CAGE analysis