Hb_004668_020

Information

Type -
Description -
Location Contig4668: 5237-16794
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012067647.1
description PREDICTED: uncharacterized protein LOC105630444 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15609 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44099: 5395-6320 , PASA_asmbl_44101: 15636-33241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004668_020 0.0 - - PREDICTED: uncharacterized protein LOC105630444 isoform X2 [Jatropha curcas]
2 Hb_010042_010 0.0861099323 - - Urease accessory protein ureD, putative [Ricinus communis]
3 Hb_015807_040 0.0977287267 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
4 Hb_001904_090 0.0992010812 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
5 Hb_158467_010 0.1017053054 - - transporter, putative [Ricinus communis]
6 Hb_001396_100 0.102497847 - - DNA binding protein, putative [Ricinus communis]
7 Hb_032264_110 0.1039817999 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
8 Hb_001461_010 0.1054289281 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
9 Hb_001833_110 0.10555395 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004724_340 0.1082343267 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
11 Hb_000638_250 0.1099207406 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_004126_070 0.1103724613 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
13 Hb_008544_010 0.1104390437 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
14 Hb_094608_010 0.1118577464 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
15 Hb_001584_190 0.1132230989 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
16 Hb_001369_690 0.1133629131 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
17 Hb_001059_030 0.1143382818 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
18 Hb_001114_130 0.1168560635 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
19 Hb_007012_060 0.1169240752 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
20 Hb_000479_190 0.1171252998 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004668_020 Hb_004668_020 Hb_010042_010 Hb_010042_010 Hb_004668_020--Hb_010042_010 Hb_015807_040 Hb_015807_040 Hb_004668_020--Hb_015807_040 Hb_001904_090 Hb_001904_090 Hb_004668_020--Hb_001904_090 Hb_158467_010 Hb_158467_010 Hb_004668_020--Hb_158467_010 Hb_001396_100 Hb_001396_100 Hb_004668_020--Hb_001396_100 Hb_032264_110 Hb_032264_110 Hb_004668_020--Hb_032264_110 Hb_010042_010--Hb_015807_040 Hb_000331_450 Hb_000331_450 Hb_010042_010--Hb_000331_450 Hb_001461_010 Hb_001461_010 Hb_010042_010--Hb_001461_010 Hb_065525_020 Hb_065525_020 Hb_010042_010--Hb_065525_020 Hb_000934_250 Hb_000934_250 Hb_010042_010--Hb_000934_250 Hb_008544_010 Hb_008544_010 Hb_010042_010--Hb_008544_010 Hb_015807_040--Hb_000331_450 Hb_006816_210 Hb_006816_210 Hb_015807_040--Hb_006816_210 Hb_001833_110 Hb_001833_110 Hb_015807_040--Hb_001833_110 Hb_159809_020 Hb_159809_020 Hb_015807_040--Hb_159809_020 Hb_001832_010 Hb_001832_010 Hb_015807_040--Hb_001832_010 Hb_001904_090--Hb_001396_100 Hb_027654_050 Hb_027654_050 Hb_001904_090--Hb_027654_050 Hb_001519_030 Hb_001519_030 Hb_001904_090--Hb_001519_030 Hb_000123_170 Hb_000123_170 Hb_001904_090--Hb_000123_170 Hb_006831_120 Hb_006831_120 Hb_001904_090--Hb_006831_120 Hb_008616_070 Hb_008616_070 Hb_001904_090--Hb_008616_070 Hb_158467_010--Hb_032264_110 Hb_012053_070 Hb_012053_070 Hb_158467_010--Hb_012053_070 Hb_000671_090 Hb_000671_090 Hb_158467_010--Hb_000671_090 Hb_158467_010--Hb_065525_020 Hb_000638_250 Hb_000638_250 Hb_158467_010--Hb_000638_250 Hb_009773_020 Hb_009773_020 Hb_158467_010--Hb_009773_020 Hb_001191_090 Hb_001191_090 Hb_001396_100--Hb_001191_090 Hb_029866_020 Hb_029866_020 Hb_001396_100--Hb_029866_020 Hb_000240_090 Hb_000240_090 Hb_001396_100--Hb_000240_090 Hb_000181_300 Hb_000181_300 Hb_001396_100--Hb_000181_300 Hb_001396_100--Hb_006831_120 Hb_001009_270 Hb_001009_270 Hb_032264_110--Hb_001009_270 Hb_010655_010 Hb_010655_010 Hb_032264_110--Hb_010655_010 Hb_008300_010 Hb_008300_010 Hb_032264_110--Hb_008300_010 Hb_000510_320 Hb_000510_320 Hb_032264_110--Hb_000510_320 Hb_000656_040 Hb_000656_040 Hb_032264_110--Hb_000656_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.3658 0.199508 0.627778 0.720185 0.827578 0.993855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.67746 1.31909 1.59952 0.63148 0.394641

CAGE analysis