Hb_004429_150

Information

Type -
Description -
Location Contig4429: 120032-123234
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_150 0.0 - - -
2 Hb_005000_070 0.1218964187 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
3 Hb_000193_200 0.1219470745 - - rotamase, putative [Ricinus communis]
4 Hb_000622_040 0.1267124572 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
5 Hb_002918_200 0.1294736694 - - -
6 Hb_010080_090 0.1355165251 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
7 Hb_001083_020 0.1382077305 - - -
8 Hb_001688_020 0.1398060644 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
9 Hb_001545_140 0.1401469693 transcription factor TF Family: NAC -
10 Hb_017948_010 0.1407099207 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
11 Hb_001538_110 0.1408356539 - - PREDICTED: histone deacetylase 6, partial [Oryzias latipes]
12 Hb_012675_060 0.1408809727 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
13 Hb_148200_010 0.1409681268 - - hypothetical protein 33 [Hevea brasiliensis]
14 Hb_001616_060 0.1413123652 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
15 Hb_001775_110 0.141408845 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
16 Hb_000010_470 0.1427439972 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
17 Hb_004156_040 0.1436270945 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
18 Hb_000030_100 0.1439955298 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
19 Hb_000834_270 0.1443911743 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
20 Hb_009404_020 0.1444049175 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004429_150 Hb_004429_150 Hb_005000_070 Hb_005000_070 Hb_004429_150--Hb_005000_070 Hb_000193_200 Hb_000193_200 Hb_004429_150--Hb_000193_200 Hb_000622_040 Hb_000622_040 Hb_004429_150--Hb_000622_040 Hb_002918_200 Hb_002918_200 Hb_004429_150--Hb_002918_200 Hb_010080_090 Hb_010080_090 Hb_004429_150--Hb_010080_090 Hb_001083_020 Hb_001083_020 Hb_004429_150--Hb_001083_020 Hb_000230_380 Hb_000230_380 Hb_005000_070--Hb_000230_380 Hb_000429_170 Hb_000429_170 Hb_005000_070--Hb_000429_170 Hb_007924_020 Hb_007924_020 Hb_005000_070--Hb_007924_020 Hb_005000_070--Hb_000622_040 Hb_000061_300 Hb_000061_300 Hb_005000_070--Hb_000061_300 Hb_002056_060 Hb_002056_060 Hb_005000_070--Hb_002056_060 Hb_002107_120 Hb_002107_120 Hb_000193_200--Hb_002107_120 Hb_003376_130 Hb_003376_130 Hb_000193_200--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000193_200--Hb_000069_100 Hb_000224_090 Hb_000224_090 Hb_000193_200--Hb_000224_090 Hb_003053_030 Hb_003053_030 Hb_000193_200--Hb_003053_030 Hb_012265_010 Hb_012265_010 Hb_000193_200--Hb_012265_010 Hb_000622_040--Hb_007924_020 Hb_000622_040--Hb_000429_170 Hb_000922_270 Hb_000922_270 Hb_000622_040--Hb_000922_270 Hb_009404_020 Hb_009404_020 Hb_000622_040--Hb_009404_020 Hb_034299_060 Hb_034299_060 Hb_000622_040--Hb_034299_060 Hb_004837_140 Hb_004837_140 Hb_002918_200--Hb_004837_140 Hb_004108_230 Hb_004108_230 Hb_002918_200--Hb_004108_230 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_003175_040 Hb_003175_040 Hb_002918_200--Hb_003175_040 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210 Hb_012675_060 Hb_012675_060 Hb_010080_090--Hb_012675_060 Hb_010080_090--Hb_000834_270 Hb_004724_340 Hb_004724_340 Hb_010080_090--Hb_004724_340 Hb_002963_010 Hb_002963_010 Hb_010080_090--Hb_002963_010 Hb_004586_320 Hb_004586_320 Hb_010080_090--Hb_004586_320 Hb_001360_050 Hb_001360_050 Hb_010080_090--Hb_001360_050 Hb_001775_110 Hb_001775_110 Hb_001083_020--Hb_001775_110 Hb_000230_510 Hb_000230_510 Hb_001083_020--Hb_000230_510 Hb_017948_010 Hb_017948_010 Hb_001083_020--Hb_017948_010 Hb_001083_020--Hb_012675_060 Hb_001083_020--Hb_001360_050 Hb_009393_210 Hb_009393_210 Hb_001083_020--Hb_009393_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94992 0.335933 0.704899 0.700991 3.20847 1.38214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.22649 5.89982 5.40353 2.78951 2.13393

CAGE analysis