Hb_003927_150

Information

Type -
Description -
Location Contig3927: 162417-163441
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003927_150 0.0 - - -
2 Hb_001235_060 0.1780520276 - - -
3 Hb_000805_300 0.2011842549 - - -
4 Hb_122567_020 0.2092223679 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
5 Hb_001385_080 0.2139815799 - - -
6 Hb_101151_030 0.2208966174 - - -
7 Hb_059952_010 0.2212614182 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
8 Hb_001454_110 0.2238133131 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
9 Hb_079212_010 0.2242378523 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003623_020 0.2246076756 - - -
11 Hb_001691_160 0.2330179237 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000248_030 0.2372638845 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
13 Hb_005016_070 0.2385495057 - - -
14 Hb_000002_030 0.2414609216 - - -
15 Hb_005933_010 0.2417895467 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
16 Hb_032531_040 0.2517450539 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
17 Hb_145827_010 0.2536454412 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
18 Hb_005839_010 0.2558447663 - - 30S ribosomal protein s13 [Camellia sinensis]
19 Hb_000962_010 0.2567404487 - - -
20 Hb_079978_010 0.2615847097 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_003927_150 Hb_003927_150 Hb_001235_060 Hb_001235_060 Hb_003927_150--Hb_001235_060 Hb_000805_300 Hb_000805_300 Hb_003927_150--Hb_000805_300 Hb_122567_020 Hb_122567_020 Hb_003927_150--Hb_122567_020 Hb_001385_080 Hb_001385_080 Hb_003927_150--Hb_001385_080 Hb_101151_030 Hb_101151_030 Hb_003927_150--Hb_101151_030 Hb_059952_010 Hb_059952_010 Hb_003927_150--Hb_059952_010 Hb_005933_010 Hb_005933_010 Hb_001235_060--Hb_005933_010 Hb_000248_030 Hb_000248_030 Hb_001235_060--Hb_000248_030 Hb_000248_010 Hb_000248_010 Hb_001235_060--Hb_000248_010 Hb_001235_060--Hb_122567_020 Hb_001235_060--Hb_000805_300 Hb_000002_030 Hb_000002_030 Hb_001235_060--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_000805_300--Hb_001454_110 Hb_000805_300--Hb_122567_020 Hb_000805_300--Hb_101151_030 Hb_032531_040 Hb_032531_040 Hb_000805_300--Hb_032531_040 Hb_000805_300--Hb_005933_010 Hb_000805_300--Hb_059952_010 Hb_122567_020--Hb_005933_010 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_059952_010 Hb_122567_020--Hb_001385_080 Hb_001385_080--Hb_005933_010 Hb_001385_080--Hb_059952_010 Hb_001385_080--Hb_000805_300 Hb_001385_080--Hb_001454_110 Hb_001385_080--Hb_101151_030 Hb_003623_020 Hb_003623_020 Hb_101151_030--Hb_003623_020 Hb_079978_010 Hb_079978_010 Hb_101151_030--Hb_079978_010 Hb_101151_030--Hb_000002_030 Hb_101151_030--Hb_001454_110 Hb_101151_030--Hb_001235_060 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_059952_010--Hb_005933_010 Hb_059952_010--Hb_001454_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16956 0 0 4.96355 0.873929 50.2733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.86161 0 0 2.68035 0

CAGE analysis