Hb_002855_020

Information

Type -
Description -
Location Contig2855: 42279-43883
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002855_020 0.0 - - -
2 Hb_171276_010 0.131575842 - - -
3 Hb_087388_010 0.2775874981 transcription factor TF Family: bHLH PREDICTED: transcription factor DYT1 [Jatropha curcas]
4 Hb_000170_180 0.2981652714 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
5 Hb_008453_040 0.3093405517 - - PREDICTED: expansin-A11 [Jatropha curcas]
6 Hb_000347_520 0.311789546 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
7 Hb_010866_020 0.3214725692 - - unnamed protein product [Vitis vinifera]
8 Hb_005870_010 0.3245520704 - - -
9 Hb_000367_110 0.3505117869 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
10 Hb_002675_210 0.3514687682 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
11 Hb_004032_340 0.3523451477 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
12 Hb_002805_100 0.3560042424 - - Receptor-like protein 12 [Morus notabilis]
13 Hb_078804_010 0.3579557892 - - kinase, putative [Ricinus communis]
14 Hb_001638_180 0.3591164782 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
15 Hb_004308_010 0.3607760242 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
16 Hb_000170_170 0.3623407483 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
17 Hb_000162_270 0.3630672009 - - PREDICTED: uncharacterized protein LOC104442671 [Eucalyptus grandis]
18 Hb_152640_010 0.3640177954 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
19 Hb_002228_130 0.3656408073 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007741_090 0.3656594159 - - Autophagy-related 8f -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_002855_020 Hb_002855_020 Hb_171276_010 Hb_171276_010 Hb_002855_020--Hb_171276_010 Hb_087388_010 Hb_087388_010 Hb_002855_020--Hb_087388_010 Hb_000170_180 Hb_000170_180 Hb_002855_020--Hb_000170_180 Hb_008453_040 Hb_008453_040 Hb_002855_020--Hb_008453_040 Hb_000347_520 Hb_000347_520 Hb_002855_020--Hb_000347_520 Hb_010866_020 Hb_010866_020 Hb_002855_020--Hb_010866_020 Hb_171276_010--Hb_087388_010 Hb_171276_010--Hb_000170_180 Hb_171276_010--Hb_008453_040 Hb_004208_020 Hb_004208_020 Hb_171276_010--Hb_004208_020 Hb_121921_010 Hb_121921_010 Hb_171276_010--Hb_121921_010 Hb_087388_010--Hb_008453_040 Hb_087388_010--Hb_000347_520 Hb_087388_010--Hb_010866_020 Hb_005870_010 Hb_005870_010 Hb_087388_010--Hb_005870_010 Hb_087388_010--Hb_000170_180 Hb_004032_340 Hb_004032_340 Hb_087388_010--Hb_004032_340 Hb_000614_310 Hb_000614_310 Hb_000170_180--Hb_000614_310 Hb_000170_180--Hb_000347_520 Hb_000367_110 Hb_000367_110 Hb_000170_180--Hb_000367_110 Hb_001195_670 Hb_001195_670 Hb_000170_180--Hb_001195_670 Hb_004308_010 Hb_004308_010 Hb_000170_180--Hb_004308_010 Hb_008453_040--Hb_000347_520 Hb_002986_040 Hb_002986_040 Hb_008453_040--Hb_002986_040 Hb_008453_040--Hb_010866_020 Hb_180924_010 Hb_180924_010 Hb_008453_040--Hb_180924_010 Hb_008453_040--Hb_004032_340 Hb_000347_520--Hb_010866_020 Hb_006469_110 Hb_006469_110 Hb_000347_520--Hb_006469_110 Hb_003333_070 Hb_003333_070 Hb_000347_520--Hb_003333_070 Hb_000188_080 Hb_000188_080 Hb_000347_520--Hb_000188_080 Hb_000347_520--Hb_000367_110 Hb_002309_030 Hb_002309_030 Hb_000347_520--Hb_002309_030 Hb_010866_020--Hb_005870_010 Hb_010866_020--Hb_004308_010 Hb_010866_020--Hb_006469_110 Hb_000170_170 Hb_000170_170 Hb_010866_020--Hb_000170_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0737935 0.338863 0.0854339 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105692 0 0 0.0341266 0

CAGE analysis