Hb_002217_180

Information

Type transcription factor
Description TF Family: MYB
Location Contig2217: 210767-212539
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10080g
description POPTRDRAFT_564352; GmMYB12 family protein
nr
ID XP_011027944.1
description PREDICTED: transcription factor MYB108-like [Populus euphratica]
swissprot
ID Q9LDE1
description Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1
trembl
ID A0A067K6S1
description MYB family protein OS=Jatropha curcas GN=JCGZ_19050 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb108-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22910: 212402-212546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_180 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108-like [Populus euphratica]
2 Hb_001437_080 0.1738249117 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
3 Hb_114893_030 0.1743022426 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
4 Hb_002435_110 0.1762618363 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
5 Hb_000457_100 0.177470992 - - prohibitin, putative [Ricinus communis]
6 Hb_000258_350 0.182984488 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
7 Hb_002759_150 0.1861803221 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
8 Hb_000679_090 0.1875489568 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
9 Hb_006582_020 0.1887553981 - - Zinc finger protein ZFPM1 [Theobroma cacao]
10 Hb_009265_090 0.1912112723 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
11 Hb_003929_130 0.1933166736 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
12 Hb_004228_030 0.1934333567 - - unnamed protein product [Coffea canephora]
13 Hb_001754_250 0.1948544261 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
14 Hb_003992_240 0.1966063196 - - -
15 Hb_022425_040 0.1970724338 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
16 Hb_000326_060 0.1985073381 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
17 Hb_002486_040 0.1985748519 - - -
18 Hb_007575_060 0.1987172806 - - hypothetical protein CARUB_v10002094mg, partial [Capsella rubella]
19 Hb_000256_140 0.1994188455 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
20 Hb_011609_100 0.2002748643 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002217_180 Hb_002217_180 Hb_001437_080 Hb_001437_080 Hb_002217_180--Hb_001437_080 Hb_114893_030 Hb_114893_030 Hb_002217_180--Hb_114893_030 Hb_002435_110 Hb_002435_110 Hb_002217_180--Hb_002435_110 Hb_000457_100 Hb_000457_100 Hb_002217_180--Hb_000457_100 Hb_000258_350 Hb_000258_350 Hb_002217_180--Hb_000258_350 Hb_002759_150 Hb_002759_150 Hb_002217_180--Hb_002759_150 Hb_000120_330 Hb_000120_330 Hb_001437_080--Hb_000120_330 Hb_005116_060 Hb_005116_060 Hb_001437_080--Hb_005116_060 Hb_002234_100 Hb_002234_100 Hb_001437_080--Hb_002234_100 Hb_001030_020 Hb_001030_020 Hb_001437_080--Hb_001030_020 Hb_000856_380 Hb_000856_380 Hb_001437_080--Hb_000856_380 Hb_005306_190 Hb_005306_190 Hb_001437_080--Hb_005306_190 Hb_002518_080 Hb_002518_080 Hb_114893_030--Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_114893_030--Hb_022425_040 Hb_114893_030--Hb_000258_350 Hb_000917_110 Hb_000917_110 Hb_114893_030--Hb_000917_110 Hb_000127_180 Hb_000127_180 Hb_114893_030--Hb_000127_180 Hb_015279_010 Hb_015279_010 Hb_114893_030--Hb_015279_010 Hb_006582_020 Hb_006582_020 Hb_002435_110--Hb_006582_020 Hb_000567_210 Hb_000567_210 Hb_002435_110--Hb_000567_210 Hb_000859_060 Hb_000859_060 Hb_002435_110--Hb_000859_060 Hb_002685_170 Hb_002685_170 Hb_002435_110--Hb_002685_170 Hb_009838_050 Hb_009838_050 Hb_002435_110--Hb_009838_050 Hb_009767_100 Hb_009767_100 Hb_002435_110--Hb_009767_100 Hb_027472_040 Hb_027472_040 Hb_000457_100--Hb_027472_040 Hb_001481_090 Hb_001481_090 Hb_000457_100--Hb_001481_090 Hb_007576_080 Hb_007576_080 Hb_000457_100--Hb_007576_080 Hb_004837_240 Hb_004837_240 Hb_000457_100--Hb_004837_240 Hb_003935_020 Hb_003935_020 Hb_000457_100--Hb_003935_020 Hb_002585_040 Hb_002585_040 Hb_000457_100--Hb_002585_040 Hb_000698_030 Hb_000698_030 Hb_000258_350--Hb_000698_030 Hb_011609_100 Hb_011609_100 Hb_000258_350--Hb_011609_100 Hb_172632_090 Hb_172632_090 Hb_000258_350--Hb_172632_090 Hb_009265_090 Hb_009265_090 Hb_000258_350--Hb_009265_090 Hb_003126_080 Hb_003126_080 Hb_000258_350--Hb_003126_080 Hb_003952_090 Hb_003952_090 Hb_002759_150--Hb_003952_090 Hb_000465_460 Hb_000465_460 Hb_002759_150--Hb_000465_460 Hb_002759_150--Hb_004837_240 Hb_002759_150--Hb_001481_090 Hb_001766_110 Hb_001766_110 Hb_002759_150--Hb_001766_110 Hb_003992_240 Hb_003992_240 Hb_002759_150--Hb_003992_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79393 2.16291 1.19818 0.112439 0.754575 0.750693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.886651 3.37684 1.15335 1.65065 0.301732

CAGE analysis