Hb_001969_010

Information

Type -
Description -
Location Contig1969: 6920-7813
Sequence    

Annotation

kegg
ID rcu:RCOM_1592110
description hypothetical protein
nr
ID XP_010270870.1
description PREDICTED: probable protein Pop3 [Nelumbo nucifera]
swissprot
ID I6WU39
description Olivetolic acid cyclase OS=Cannabis sativa GN=OAC PE=1 SV=1
trembl
ID B9R7J0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1592110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19727: 6914-7835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_010 0.0 - - PREDICTED: probable protein Pop3 [Nelumbo nucifera]
2 Hb_003086_120 0.1755103858 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
3 Hb_000449_040 0.2208915576 - - protein with unknown function [Ricinus communis]
4 Hb_000684_160 0.2298062738 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
5 Hb_000454_110 0.2462056286 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
6 Hb_150299_030 0.2490940752 - - conserved hypothetical protein [Ricinus communis]
7 Hb_025964_030 0.250184018 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
8 Hb_103752_010 0.2526284515 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
9 Hb_116349_170 0.2573125929 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
10 Hb_000039_170 0.2601170882 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
11 Hb_001481_180 0.2602603079 - - plasma membrane H+-ATPase [Hevea brasiliensis]
12 Hb_012395_200 0.2628237841 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006738_010 0.2635061295 - - PREDICTED: uncharacterized protein LOC105634993 [Jatropha curcas]
14 Hb_001221_510 0.2646331893 - - Protein HVA22, putative [Ricinus communis]
15 Hb_010172_100 0.2647002161 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
16 Hb_002235_220 0.2648416543 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
17 Hb_007747_130 0.2662374396 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
18 Hb_000444_030 0.2670868191 - - PREDICTED: expansin-A20 [Jatropha curcas]
19 Hb_000227_130 0.2679611207 - - PREDICTED: peroxiredoxin-2F, mitochondrial [Jatropha curcas]
20 Hb_005908_040 0.2682927421 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]

Gene co-expression network

sample Hb_001969_010 Hb_001969_010 Hb_003086_120 Hb_003086_120 Hb_001969_010--Hb_003086_120 Hb_000449_040 Hb_000449_040 Hb_001969_010--Hb_000449_040 Hb_000684_160 Hb_000684_160 Hb_001969_010--Hb_000684_160 Hb_000454_110 Hb_000454_110 Hb_001969_010--Hb_000454_110 Hb_150299_030 Hb_150299_030 Hb_001969_010--Hb_150299_030 Hb_025964_030 Hb_025964_030 Hb_001969_010--Hb_025964_030 Hb_007747_190 Hb_007747_190 Hb_003086_120--Hb_007747_190 Hb_003602_050 Hb_003602_050 Hb_003086_120--Hb_003602_050 Hb_003086_120--Hb_000449_040 Hb_000227_130 Hb_000227_130 Hb_003086_120--Hb_000227_130 Hb_000096_060 Hb_000096_060 Hb_003086_120--Hb_000096_060 Hb_116349_170 Hb_116349_170 Hb_000449_040--Hb_116349_170 Hb_002781_020 Hb_002781_020 Hb_000449_040--Hb_002781_020 Hb_000487_320 Hb_000487_320 Hb_000449_040--Hb_000487_320 Hb_000645_190 Hb_000645_190 Hb_000449_040--Hb_000645_190 Hb_143629_230 Hb_143629_230 Hb_000449_040--Hb_143629_230 Hb_000134_020 Hb_000134_020 Hb_000449_040--Hb_000134_020 Hb_012395_200 Hb_012395_200 Hb_000684_160--Hb_012395_200 Hb_003349_070 Hb_003349_070 Hb_000684_160--Hb_003349_070 Hb_007810_030 Hb_007810_030 Hb_000684_160--Hb_007810_030 Hb_103752_010 Hb_103752_010 Hb_000684_160--Hb_103752_010 Hb_001008_010 Hb_001008_010 Hb_000684_160--Hb_001008_010 Hb_011245_020 Hb_011245_020 Hb_000684_160--Hb_011245_020 Hb_001723_080 Hb_001723_080 Hb_000454_110--Hb_001723_080 Hb_001012_040 Hb_001012_040 Hb_000454_110--Hb_001012_040 Hb_000454_110--Hb_103752_010 Hb_149683_010 Hb_149683_010 Hb_000454_110--Hb_149683_010 Hb_000039_170 Hb_000039_170 Hb_000454_110--Hb_000039_170 Hb_000454_110--Hb_012395_200 Hb_004958_050 Hb_004958_050 Hb_150299_030--Hb_004958_050 Hb_000526_020 Hb_000526_020 Hb_150299_030--Hb_000526_020 Hb_011689_050 Hb_011689_050 Hb_150299_030--Hb_011689_050 Hb_000052_010 Hb_000052_010 Hb_150299_030--Hb_000052_010 Hb_150299_030--Hb_002781_020 Hb_034585_040 Hb_034585_040 Hb_150299_030--Hb_034585_040 Hb_000062_580 Hb_000062_580 Hb_025964_030--Hb_000062_580 Hb_003020_310 Hb_003020_310 Hb_025964_030--Hb_003020_310 Hb_001437_220 Hb_001437_220 Hb_025964_030--Hb_001437_220 Hb_001035_040 Hb_001035_040 Hb_025964_030--Hb_001035_040 Hb_007047_010 Hb_007047_010 Hb_025964_030--Hb_007047_010 Hb_000922_170 Hb_000922_170 Hb_025964_030--Hb_000922_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14076 0 0 0 0 1.90142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03851 3.2088 1.16371 0.123207 0.422071

CAGE analysis