Hb_001097_020

Information

Type -
Description -
Location Contig1097: 7937-11460
Sequence    

Annotation

kegg
ID pop:POPTR_0011s00490g
description POPTRDRAFT_568202; hypothetical protein
nr
ID XP_002317207.2
description hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
swissprot
ID Q9M0Y9
description CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana GN=RIC10 PE=2 SV=1
trembl
ID B9HZL2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s00490g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02887: 9991-10175 , PASA_asmbl_02888: 8302-10458 , PASA_asmbl_02889: 11676-12580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001097_020 0.0 - - hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
2 Hb_000805_130 0.1167742274 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006925_040 0.1228240984 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
4 Hb_000948_210 0.1322905927 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
5 Hb_001634_040 0.1323401343 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
6 Hb_179296_010 0.1336562806 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
7 Hb_000699_160 0.1353212859 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
8 Hb_000617_090 0.1364126313 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
9 Hb_001300_040 0.1371810824 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
10 Hb_000330_070 0.1416317303 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
11 Hb_001221_310 0.1428883611 - - sec61 gamma subunit, putative [Ricinus communis]
12 Hb_003203_040 0.1429875998 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
13 Hb_019516_100 0.1430094534 - - 40S ribosomal protein S14, putative [Ricinus communis]
14 Hb_000312_090 0.1438178249 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
15 Hb_003053_010 0.1445636293 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
16 Hb_000453_090 0.1445809525 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
17 Hb_076626_010 0.1451414491 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011628_040 0.1451940449 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
19 Hb_000012_100 0.1460002928 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
20 Hb_000046_560 0.1465812287 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]

Gene co-expression network

sample Hb_001097_020 Hb_001097_020 Hb_000805_130 Hb_000805_130 Hb_001097_020--Hb_000805_130 Hb_006925_040 Hb_006925_040 Hb_001097_020--Hb_006925_040 Hb_000948_210 Hb_000948_210 Hb_001097_020--Hb_000948_210 Hb_001634_040 Hb_001634_040 Hb_001097_020--Hb_001634_040 Hb_179296_010 Hb_179296_010 Hb_001097_020--Hb_179296_010 Hb_000699_160 Hb_000699_160 Hb_001097_020--Hb_000699_160 Hb_007575_070 Hb_007575_070 Hb_000805_130--Hb_007575_070 Hb_000805_130--Hb_001634_040 Hb_000172_420 Hb_000172_420 Hb_000805_130--Hb_000172_420 Hb_000062_390 Hb_000062_390 Hb_000805_130--Hb_000062_390 Hb_008948_050 Hb_008948_050 Hb_000805_130--Hb_008948_050 Hb_076626_010 Hb_076626_010 Hb_000805_130--Hb_076626_010 Hb_001141_140 Hb_001141_140 Hb_006925_040--Hb_001141_140 Hb_000046_560 Hb_000046_560 Hb_006925_040--Hb_000046_560 Hb_002783_270 Hb_002783_270 Hb_006925_040--Hb_002783_270 Hb_003053_010 Hb_003053_010 Hb_006925_040--Hb_003053_010 Hb_007044_130 Hb_007044_130 Hb_006925_040--Hb_007044_130 Hb_000996_140 Hb_000996_140 Hb_006925_040--Hb_000996_140 Hb_000617_090 Hb_000617_090 Hb_000948_210--Hb_000617_090 Hb_012753_230 Hb_012753_230 Hb_000948_210--Hb_012753_230 Hb_012573_070 Hb_012573_070 Hb_000948_210--Hb_012573_070 Hb_004052_020 Hb_004052_020 Hb_000948_210--Hb_004052_020 Hb_000510_110 Hb_000510_110 Hb_000948_210--Hb_000510_110 Hb_000297_230 Hb_000297_230 Hb_000948_210--Hb_000297_230 Hb_001634_040--Hb_007575_070 Hb_001634_040--Hb_000062_390 Hb_000181_300 Hb_000181_300 Hb_001634_040--Hb_000181_300 Hb_000012_100 Hb_000012_100 Hb_001634_040--Hb_000012_100 Hb_000193_120 Hb_000193_120 Hb_001634_040--Hb_000193_120 Hb_174865_010 Hb_174865_010 Hb_179296_010--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_179296_010--Hb_000735_040 Hb_006915_040 Hb_006915_040 Hb_179296_010--Hb_006915_040 Hb_000134_070 Hb_000134_070 Hb_179296_010--Hb_000134_070 Hb_000676_160 Hb_000676_160 Hb_179296_010--Hb_000676_160 Hb_001512_080 Hb_001512_080 Hb_179296_010--Hb_001512_080 Hb_010672_060 Hb_010672_060 Hb_000699_160--Hb_010672_060 Hb_005063_050 Hb_005063_050 Hb_000699_160--Hb_005063_050 Hb_001221_310 Hb_001221_310 Hb_000699_160--Hb_001221_310 Hb_143496_010 Hb_143496_010 Hb_000699_160--Hb_143496_010 Hb_012022_120 Hb_012022_120 Hb_000699_160--Hb_012022_120 Hb_002830_020 Hb_002830_020 Hb_000699_160--Hb_002830_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.81832 0.16776 5.03795 3.04624 2.01451 4.28924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.2701 15.7075 6.89737 1.38029 1.06298

CAGE analysis