Hb_000679_290

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig679: 199247-200400
Sequence    

Annotation

kegg
ID rcu:RCOM_0923890
description ATP binding protein, putative (EC:1.3.1.74)
nr
ID XP_002515504.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q93WC4
description Auxin-responsive protein IAA29 OS=Arabidopsis thaliana GN=IAA29 PE=2 SV=2
trembl
ID B9RP35
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_0923890 PE=3 SV=1
Gene Ontology
ID GO:0003824
description auxin-responsive protein iaa29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53712: 199025-200359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_290 0.0 transcription factor TF Family: AUX/IAA ATP binding protein, putative [Ricinus communis]
2 Hb_010080_050 0.1102890797 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
3 Hb_002078_070 0.1116846736 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000445_260 0.1163399701 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
5 Hb_001123_330 0.1175579444 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
6 Hb_004724_280 0.125756066 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003055_160 0.1298070802 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
8 Hb_000089_090 0.1298756339 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
9 Hb_003464_010 0.1321176567 - - conserved hypothetical protein [Ricinus communis]
10 Hb_099538_010 0.1323002117 - - unnamed protein product [Vitis vinifera]
11 Hb_012092_040 0.1329304919 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
12 Hb_001856_210 0.134202929 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
13 Hb_000336_010 0.1348429683 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
14 Hb_105377_010 0.1352725068 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
15 Hb_003185_040 0.1358691828 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
16 Hb_004319_010 0.1387951507 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
17 Hb_007474_010 0.1399141408 - - vacuolar invertase [Manihot esculenta]
18 Hb_001247_060 0.1406421949 - - zinc finger protein, putative [Ricinus communis]
19 Hb_087717_010 0.1425824425 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
20 Hb_000035_230 0.1426432917 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_290 Hb_000679_290 Hb_010080_050 Hb_010080_050 Hb_000679_290--Hb_010080_050 Hb_002078_070 Hb_002078_070 Hb_000679_290--Hb_002078_070 Hb_000445_260 Hb_000445_260 Hb_000679_290--Hb_000445_260 Hb_001123_330 Hb_001123_330 Hb_000679_290--Hb_001123_330 Hb_004724_280 Hb_004724_280 Hb_000679_290--Hb_004724_280 Hb_003055_160 Hb_003055_160 Hb_000679_290--Hb_003055_160 Hb_002307_150 Hb_002307_150 Hb_010080_050--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_010080_050--Hb_005211_170 Hb_010080_050--Hb_000445_260 Hb_001971_040 Hb_001971_040 Hb_010080_050--Hb_001971_040 Hb_001856_210 Hb_001856_210 Hb_010080_050--Hb_001856_210 Hb_089140_070 Hb_089140_070 Hb_010080_050--Hb_089140_070 Hb_087717_010 Hb_087717_010 Hb_002078_070--Hb_087717_010 Hb_002078_070--Hb_004724_280 Hb_000336_010 Hb_000336_010 Hb_002078_070--Hb_000336_010 Hb_105377_010 Hb_105377_010 Hb_002078_070--Hb_105377_010 Hb_003420_010 Hb_003420_010 Hb_002078_070--Hb_003420_010 Hb_002078_070--Hb_001123_330 Hb_000445_260--Hb_001856_210 Hb_000445_260--Hb_005211_170 Hb_003464_010 Hb_003464_010 Hb_000445_260--Hb_003464_010 Hb_000445_260--Hb_002307_150 Hb_000878_080 Hb_000878_080 Hb_000445_260--Hb_000878_080 Hb_001123_330--Hb_004724_280 Hb_001123_330--Hb_000336_010 Hb_000175_080 Hb_000175_080 Hb_001123_330--Hb_000175_080 Hb_003680_180 Hb_003680_180 Hb_001123_330--Hb_003680_180 Hb_003185_040 Hb_003185_040 Hb_001123_330--Hb_003185_040 Hb_007474_010 Hb_007474_010 Hb_001123_330--Hb_007474_010 Hb_004724_280--Hb_000336_010 Hb_004724_280--Hb_000175_080 Hb_004724_280--Hb_003420_010 Hb_004724_280--Hb_007474_010 Hb_123713_010 Hb_123713_010 Hb_003055_160--Hb_123713_010 Hb_003055_160--Hb_004724_280 Hb_003055_160--Hb_001856_210 Hb_000089_090 Hb_000089_090 Hb_003055_160--Hb_000089_090 Hb_003055_160--Hb_105377_010 Hb_003055_160--Hb_001123_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0381728 2.16 2.90375 0.11316 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.055631 0.134037

CAGE analysis