Hb_000367_100

Information

Type -
Description -
Location Contig367: 99746-101644
Sequence    

Annotation

kegg
ID eus:EUTSA_v10004543mg
description hypothetical protein
nr
ID CDY27798.1
description BnaA05g32070D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078GT61
description BnaA05g32070D protein OS=Brassica napus GN=BnaA05g32070D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37737: 99790-100866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_100 0.0 - - BnaA05g32070D [Brassica napus]
2 Hb_000320_180 0.1404677493 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
3 Hb_003581_220 0.1407444756 - - unnamed protein product [Vitis vinifera]
4 Hb_001076_020 0.1452595052 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
5 Hb_002603_150 0.1487312986 - - PREDICTED: protein yippee-like [Jatropha curcas]
6 Hb_000069_550 0.1539383075 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
7 Hb_000318_160 0.1624462726 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
8 Hb_024714_050 0.1626058974 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
9 Hb_002843_140 0.1630938084 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
10 Hb_000530_070 0.1646870654 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
11 Hb_017948_010 0.1656601994 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
12 Hb_000210_220 0.1682499789 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
13 Hb_001953_090 0.1717518632 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
14 Hb_007594_120 0.1723327144 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
15 Hb_076626_010 0.1724261282 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000224_140 0.1730071225 - - ribonuclease z, chloroplast, putative [Ricinus communis]
17 Hb_001846_070 0.1731777652 - - PREDICTED: fructokinase-1 [Jatropha curcas]
18 Hb_002687_170 0.1734057741 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
19 Hb_000302_220 0.174203407 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
20 Hb_001158_230 0.1745793214 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]

Gene co-expression network

sample Hb_000367_100 Hb_000367_100 Hb_000320_180 Hb_000320_180 Hb_000367_100--Hb_000320_180 Hb_003581_220 Hb_003581_220 Hb_000367_100--Hb_003581_220 Hb_001076_020 Hb_001076_020 Hb_000367_100--Hb_001076_020 Hb_002603_150 Hb_002603_150 Hb_000367_100--Hb_002603_150 Hb_000069_550 Hb_000069_550 Hb_000367_100--Hb_000069_550 Hb_000318_160 Hb_000318_160 Hb_000367_100--Hb_000318_160 Hb_138585_050 Hb_138585_050 Hb_000320_180--Hb_138585_050 Hb_004459_040 Hb_004459_040 Hb_000320_180--Hb_004459_040 Hb_024714_050 Hb_024714_050 Hb_000320_180--Hb_024714_050 Hb_000042_200 Hb_000042_200 Hb_000320_180--Hb_000042_200 Hb_002687_170 Hb_002687_170 Hb_000320_180--Hb_002687_170 Hb_004846_090 Hb_004846_090 Hb_000320_180--Hb_004846_090 Hb_032969_030 Hb_032969_030 Hb_003581_220--Hb_032969_030 Hb_003581_220--Hb_002603_150 Hb_000530_070 Hb_000530_070 Hb_003581_220--Hb_000530_070 Hb_010402_050 Hb_010402_050 Hb_003581_220--Hb_010402_050 Hb_001846_070 Hb_001846_070 Hb_003581_220--Hb_001846_070 Hb_003581_220--Hb_001076_020 Hb_000224_140 Hb_000224_140 Hb_001076_020--Hb_000224_140 Hb_005463_140 Hb_005463_140 Hb_001076_020--Hb_005463_140 Hb_017948_010 Hb_017948_010 Hb_001076_020--Hb_017948_010 Hb_003326_020 Hb_003326_020 Hb_001076_020--Hb_003326_020 Hb_000193_120 Hb_000193_120 Hb_001076_020--Hb_000193_120 Hb_000181_300 Hb_000181_300 Hb_001076_020--Hb_000181_300 Hb_017862_010 Hb_017862_010 Hb_002603_150--Hb_017862_010 Hb_000069_100 Hb_000069_100 Hb_002603_150--Hb_000069_100 Hb_000012_100 Hb_000012_100 Hb_002603_150--Hb_000012_100 Hb_002603_150--Hb_000069_550 Hb_003053_030 Hb_003053_030 Hb_002603_150--Hb_003053_030 Hb_001687_040 Hb_001687_040 Hb_002603_150--Hb_001687_040 Hb_006569_100 Hb_006569_100 Hb_000069_550--Hb_006569_100 Hb_007594_120 Hb_007594_120 Hb_000069_550--Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_000069_550--Hb_002876_120 Hb_000069_550--Hb_017948_010 Hb_001191_090 Hb_001191_090 Hb_000069_550--Hb_001191_090 Hb_003349_080 Hb_003349_080 Hb_000318_160--Hb_003349_080 Hb_003050_280 Hb_003050_280 Hb_000318_160--Hb_003050_280 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000928_130 Hb_000928_130 Hb_000318_160--Hb_000928_130 Hb_000445_490 Hb_000445_490 Hb_000318_160--Hb_000445_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.34756 0 0.110791 0.208217 0.135711 0.140627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.492281 1.03199 0.574781 0.105019 0.382215

CAGE analysis