Hb_000350_090

Information

Type transcription factor
Description TF Family: GeBP
Location Contig350: 137471-138640
Sequence    

Annotation

kegg
ID rcu:RCOM_1547780
description transcription regulator, putative
nr
ID XP_002515707.1
description transcription regulator, putative [Ricinus communis]
swissprot
ID Q9SB42
description Mediator-associated protein 1 OS=Arabidopsis thaliana GN=At4g25210 PE=1 SV=1
trembl
ID B9RPN8
description Transcription regulator, putative OS=Ricinus communis GN=RCOM_1547780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36472: 137218-138651
cDNA
(Sanger)
(ID:Location)		 048_A06.ab1: 138050-138645

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000350_090 0.0 transcription factor TF Family: GeBP transcription regulator, putative [Ricinus communis]
2 Hb_005333_130 0.0970677729 - - conserved hypothetical protein [Ricinus communis]
3 Hb_131864_040 0.1054826461 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
4 Hb_001587_020 0.1146054287 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
5 Hb_000923_070 0.1220215235 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003216_100 0.1254352795 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
7 Hb_008453_090 0.1264920124 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
8 Hb_003943_030 0.1290080288 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
9 Hb_002392_040 0.130344735 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000156_100 0.1321022292 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
11 Hb_004951_040 0.1327719841 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
12 Hb_000836_080 0.132954885 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
13 Hb_007943_090 0.1329974916 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
14 Hb_016065_010 0.1340449758 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
15 Hb_000749_250 0.1348022541 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
16 Hb_003018_190 0.134914329 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
17 Hb_001232_130 0.1356684908 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
18 Hb_000059_220 0.1360747133 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
19 Hb_005463_030 0.1364216787 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
20 Hb_019654_090 0.1366353879 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]

Gene co-expression network

sample Hb_000350_090 Hb_000350_090 Hb_005333_130 Hb_005333_130 Hb_000350_090--Hb_005333_130 Hb_131864_040 Hb_131864_040 Hb_000350_090--Hb_131864_040 Hb_001587_020 Hb_001587_020 Hb_000350_090--Hb_001587_020 Hb_000923_070 Hb_000923_070 Hb_000350_090--Hb_000923_070 Hb_003216_100 Hb_003216_100 Hb_000350_090--Hb_003216_100 Hb_008453_090 Hb_008453_090 Hb_000350_090--Hb_008453_090 Hb_005333_130--Hb_008453_090 Hb_003018_200 Hb_003018_200 Hb_005333_130--Hb_003018_200 Hb_000634_100 Hb_000634_100 Hb_005333_130--Hb_000634_100 Hb_004951_040 Hb_004951_040 Hb_005333_130--Hb_004951_040 Hb_023386_080 Hb_023386_080 Hb_005333_130--Hb_023386_080 Hb_005333_130--Hb_003216_100 Hb_002603_160 Hb_002603_160 Hb_131864_040--Hb_002603_160 Hb_003018_190 Hb_003018_190 Hb_131864_040--Hb_003018_190 Hb_016065_010 Hb_016065_010 Hb_131864_040--Hb_016065_010 Hb_006846_110 Hb_006846_110 Hb_131864_040--Hb_006846_110 Hb_005488_010 Hb_005488_010 Hb_131864_040--Hb_005488_010 Hb_055062_030 Hb_055062_030 Hb_131864_040--Hb_055062_030 Hb_001587_020--Hb_004951_040 Hb_008289_060 Hb_008289_060 Hb_001587_020--Hb_008289_060 Hb_011465_040 Hb_011465_040 Hb_001587_020--Hb_011465_040 Hb_000030_100 Hb_000030_100 Hb_001587_020--Hb_000030_100 Hb_001587_020--Hb_016065_010 Hb_001587_020--Hb_000923_070 Hb_000836_070 Hb_000836_070 Hb_000923_070--Hb_000836_070 Hb_000376_050 Hb_000376_050 Hb_000923_070--Hb_000376_050 Hb_002307_030 Hb_002307_030 Hb_000923_070--Hb_002307_030 Hb_001243_050 Hb_001243_050 Hb_000923_070--Hb_001243_050 Hb_000956_010 Hb_000956_010 Hb_000923_070--Hb_000956_010 Hb_000923_070--Hb_003216_100 Hb_000883_050 Hb_000883_050 Hb_003216_100--Hb_000883_050 Hb_001248_080 Hb_001248_080 Hb_003216_100--Hb_001248_080 Hb_000531_020 Hb_000531_020 Hb_003216_100--Hb_000531_020 Hb_007101_150 Hb_007101_150 Hb_003216_100--Hb_007101_150 Hb_008453_090--Hb_004951_040 Hb_008453_090--Hb_016065_010 Hb_000193_290 Hb_000193_290 Hb_008453_090--Hb_000193_290 Hb_008453_090--Hb_055062_030 Hb_008453_090--Hb_003018_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.9187 49.3848 9.84856 23.1641 122.444 89.7376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.618 215.408 236.947 39.2236 15.1604

CAGE analysis