Hb_000045_040

Information

Type -
Description -
Location Contig45: 22419-28536
Sequence    

Annotation

kegg
ID rcu:RCOM_0592860
description anthranilate synthase component I, putative (EC:4.1.3.27)
nr
ID XP_002526888.1
description anthranilate synthase component I, putative [Ricinus communis]
swissprot
ID P32068
description Anthranilate synthase alpha subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ASA1 PE=1 SV=1
trembl
ID B9SLL9
description Anthranilate synthase component I, putative OS=Ricinus communis GN=RCOM_0592860 PE=4 SV=1
Gene Ontology
ID GO:0005950
description anthranilate synthase alpha subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43117: 22106-22685 , PASA_asmbl_43118: 23138-24853 , PASA_asmbl_43120: 25062-26215 , PASA_asmbl_43121: 27542-28560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_040 0.0 - - anthranilate synthase component I, putative [Ricinus communis]
2 Hb_001969_030 0.0836084629 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000853_020 0.092608285 - - PREDICTED: endoglucanase 17 [Populus euphratica]
4 Hb_009838_170 0.0941707507 - - Arylacetamide deacetylase, putative [Ricinus communis]
5 Hb_001123_180 0.0957793767 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000394_120 0.0980282831 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
7 Hb_000175_160 0.0987587829 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
8 Hb_022092_100 0.1019231606 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002837_120 0.1058814313 - - PREDICTED: legumin A-like [Jatropha curcas]
10 Hb_056196_020 0.1079497661 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
11 Hb_000675_130 0.1104112921 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
12 Hb_156853_010 0.110839932 - - PREDICTED: vinorine synthase-like [Populus euphratica]
13 Hb_003641_040 0.1143728079 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
14 Hb_046615_050 0.1147292132 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
15 Hb_000691_040 0.1147406409 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
16 Hb_001268_270 0.1147487768 - - protein binding protein, putative [Ricinus communis]
17 Hb_012143_010 0.1147509453 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]
18 Hb_001132_020 0.1148484089 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_004126_020 0.1148756697 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]
20 Hb_000381_060 0.1150125092 - - -

Gene co-expression network

sample Hb_000045_040 Hb_000045_040 Hb_001969_030 Hb_001969_030 Hb_000045_040--Hb_001969_030 Hb_000853_020 Hb_000853_020 Hb_000045_040--Hb_000853_020 Hb_009838_170 Hb_009838_170 Hb_000045_040--Hb_009838_170 Hb_001123_180 Hb_001123_180 Hb_000045_040--Hb_001123_180 Hb_000394_120 Hb_000394_120 Hb_000045_040--Hb_000394_120 Hb_000175_160 Hb_000175_160 Hb_000045_040--Hb_000175_160 Hb_002837_120 Hb_002837_120 Hb_001969_030--Hb_002837_120 Hb_001969_030--Hb_000853_020 Hb_001969_030--Hb_000175_160 Hb_022092_100 Hb_022092_100 Hb_001969_030--Hb_022092_100 Hb_003641_040 Hb_003641_040 Hb_001969_030--Hb_003641_040 Hb_056196_020 Hb_056196_020 Hb_001969_030--Hb_056196_020 Hb_000853_020--Hb_000175_160 Hb_000853_020--Hb_022092_100 Hb_000691_060 Hb_000691_060 Hb_000853_020--Hb_000691_060 Hb_000334_100 Hb_000334_100 Hb_000853_020--Hb_000334_100 Hb_000008_100 Hb_000008_100 Hb_000853_020--Hb_000008_100 Hb_002259_100 Hb_002259_100 Hb_009838_170--Hb_002259_100 Hb_004645_060 Hb_004645_060 Hb_009838_170--Hb_004645_060 Hb_001817_200 Hb_001817_200 Hb_009838_170--Hb_001817_200 Hb_002391_260 Hb_002391_260 Hb_009838_170--Hb_002391_260 Hb_001571_070 Hb_001571_070 Hb_009838_170--Hb_001571_070 Hb_000413_090 Hb_000413_090 Hb_009838_170--Hb_000413_090 Hb_001123_180--Hb_000394_120 Hb_001123_180--Hb_000853_020 Hb_000675_130 Hb_000675_130 Hb_001123_180--Hb_000675_130 Hb_001123_180--Hb_001969_030 Hb_001123_180--Hb_003641_040 Hb_001123_180--Hb_000175_160 Hb_000394_120--Hb_000675_130 Hb_000394_120--Hb_003641_040 Hb_000394_120--Hb_056196_020 Hb_034420_010 Hb_034420_010 Hb_000394_120--Hb_034420_010 Hb_008226_050 Hb_008226_050 Hb_000394_120--Hb_008226_050 Hb_000175_160--Hb_022092_100 Hb_000175_160--Hb_000691_060 Hb_004117_240 Hb_004117_240 Hb_000175_160--Hb_004117_240 Hb_000307_080 Hb_000307_080 Hb_000175_160--Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_000175_160--Hb_000173_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.35223 1.13492 0 0.0203854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.039334 0.0165985 0.0438191

CAGE analysis