Hb_009838_170

Information

Type -
Description -
Location Contig9838: 72436-73458
Sequence    

Annotation

kegg
ID rcu:RCOM_1217300
description Arylacetamide deacetylase, putative
nr
ID XP_002528343.1
description Arylacetamide deacetylase, putative [Ricinus communis]
swissprot
ID Q9LT10
description Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=1 SV=1
trembl
ID B9SQS4
description Arylacetamide deacetylase, putative OS=Ricinus communis GN=RCOM_1217300 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable carboxylesterase 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_170 0.0 - - Arylacetamide deacetylase, putative [Ricinus communis]
2 Hb_002259_100 0.049209575 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
3 Hb_004645_060 0.0494329494 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
4 Hb_001817_200 0.0497352393 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
5 Hb_002391_260 0.0500420437 - - hypothetical protein RCOM_0017280 [Ricinus communis]
6 Hb_001571_070 0.0502005258 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
7 Hb_000413_090 0.0509240681 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
8 Hb_009323_010 0.0517753006 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
9 Hb_007552_030 0.052907886 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
10 Hb_001322_060 0.0529231564 - - unnamed protein product [Vitis vinifera]
11 Hb_000003_800 0.0529296134 - - conserved hypothetical protein [Ricinus communis]
12 Hb_137288_010 0.0532870686 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
13 Hb_003266_110 0.0536499573 - - ATP binding protein, putative [Ricinus communis]
14 Hb_001948_060 0.0548337614 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
15 Hb_004126_020 0.054857417 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]
16 Hb_020479_010 0.0553914969 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
17 Hb_001268_270 0.0565314343 - - protein binding protein, putative [Ricinus communis]
18 Hb_187418_010 0.0565558482 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
19 Hb_000691_040 0.0567544127 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
20 Hb_046615_050 0.0572335832 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_009838_170 Hb_009838_170 Hb_002259_100 Hb_002259_100 Hb_009838_170--Hb_002259_100 Hb_004645_060 Hb_004645_060 Hb_009838_170--Hb_004645_060 Hb_001817_200 Hb_001817_200 Hb_009838_170--Hb_001817_200 Hb_002391_260 Hb_002391_260 Hb_009838_170--Hb_002391_260 Hb_001571_070 Hb_001571_070 Hb_009838_170--Hb_001571_070 Hb_000413_090 Hb_000413_090 Hb_009838_170--Hb_000413_090 Hb_002259_100--Hb_004645_060 Hb_002259_100--Hb_001817_200 Hb_002259_100--Hb_002391_260 Hb_002259_100--Hb_001571_070 Hb_002259_100--Hb_000413_090 Hb_009323_010 Hb_009323_010 Hb_002259_100--Hb_009323_010 Hb_004645_060--Hb_009323_010 Hb_004645_060--Hb_001817_200 Hb_004645_060--Hb_002391_260 Hb_004645_060--Hb_001571_070 Hb_007552_030 Hb_007552_030 Hb_004645_060--Hb_007552_030 Hb_001817_200--Hb_002391_260 Hb_001817_200--Hb_001571_070 Hb_001817_200--Hb_000413_090 Hb_001322_060 Hb_001322_060 Hb_001817_200--Hb_001322_060 Hb_002391_260--Hb_001571_070 Hb_002391_260--Hb_000413_090 Hb_002391_260--Hb_001322_060 Hb_000003_800 Hb_000003_800 Hb_002391_260--Hb_000003_800 Hb_001571_070--Hb_000413_090 Hb_001571_070--Hb_001322_060 Hb_001571_070--Hb_000003_800 Hb_000413_090--Hb_001322_060 Hb_000413_090--Hb_000003_800 Hb_137288_010 Hb_137288_010 Hb_000413_090--Hb_137288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 39.6171 15.7468 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0387475 0.0714254 0 0.158791

CAGE analysis