Gene annotation
Transcriptome id Sobic.002G388600.1
Synonym Sb02g040470
Functional annotation pectinacetylesterase domain containing protein, expressed
UniProt C5X399
Pfam PF03283
Panther DB PTHR21562 PTHR21562:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT3G05910 : Pectinacetylesterase family protein
RAP-DB (Rice) LOC_Os07g44070.1 : pectinacetylesterase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048890 , Zm00025a009923
Brachypodium KQK15037 , PNT74673
Barley HORVU2Hr1G027640.11 , HORVU2Hr1G027640.10 , HORVU2Hr1G027640.12 , HORVU2Hr1G027640.9 , HORVU2Hr1G027640.8 , HORVU2Hr1G027640.5 , HORVU2Hr1G027640.4 , HORVU2Hr1G027640.7 , HORVU2Hr1G027640.6 , HORVU2Hr1G027640.3 , HORVU2Hr1G027640.2
Wheat TraesCS2B02G178100 , TraesCS2B02G178100 , TraesCS2A02G153000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G225000 remorin C-terminal domain containing protein, putative, expressed -
2 Sobic.002G428900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MRH1, putative, expressed -
3 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
4 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.008G166050 - -
6 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
7 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
8 Sobic.007G050600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLF6 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
9 Sobic.010G054000 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
10 Sobic.010G059200 cystathionine gamma-synthase, putative, expressed K01760: cysteine-S-conjugate beta-lyase
11 Sobic.002G317600 endoribonuclease, putative, expressed -
12 Sobic.004G296800 3-isopropylmalate dehydratase small subunit 2, putative, expressed K01704: leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
13 Sobic.004G203500 actin, putative, expressed K18584: ACTR3, actin-related protein 3
14 Sobic.008G075200 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed K01627: 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)
15 Sobic.005G112566 - -
16 Sobic.010G123300 expressed protein -
17 Sobic.006G183200 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
18 Sobic.007G130800 aldehyde dehydrogenase, putative, expressed K00130: betB, betaine-aldehyde dehydrogenase
19 Sobic.009G151100 serine/threonine-protein kinase, putative, expressed -
20 Sobic.009G161100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G388600 Sobic002G388600 Sobic002G225000 Sobic002G225000 Sobic002G388600--Sobic002G225000 Sobic002G428900 Sobic002G428900 Sobic002G388600--Sobic002G428900 Sobic009G231100 Sobic009G231100 Sobic002G388600--Sobic009G231100 Sobic002G377300 Sobic002G377300 Sobic002G388600--Sobic002G377300 Sobic008G166050 Sobic008G166050 Sobic002G388600--Sobic008G166050 Sobic005G022000 Sobic005G022000 Sobic002G388600--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic002G388600--Sobic003G165800 Sobic007G050600 Sobic007G050600 Sobic002G388600--Sobic007G050600 Sobic010G054000 Sobic010G054000 Sobic002G388600--Sobic010G054000 Sobic002G225000--Sobic009G231100 Sobic003G078300 Sobic003G078300 Sobic002G225000--Sobic003G078300 Sobic002G225000--Sobic002G377300 Sobic001G379100 Sobic001G379100 Sobic002G225000--Sobic001G379100 Sobic010G165100 Sobic010G165100 Sobic002G225000--Sobic010G165100 Sobic003G148400 Sobic003G148400 Sobic002G225000--Sobic003G148400 Sobic003G223000 Sobic003G223000 Sobic002G225000--Sobic003G223000 Sobic002G225000--Sobic002G388600 Sobic002G078000 Sobic002G078000 Sobic002G225000--Sobic002G078000 Sobic002G428900--Sobic002G388600 Sobic003G122100 Sobic003G122100 Sobic002G428900--Sobic003G122100 Sobic002G428900--Sobic005G022000 Sobic004G140300 Sobic004G140300 Sobic002G428900--Sobic004G140300 Sobic010G059200 Sobic010G059200 Sobic002G428900--Sobic010G059200 Sobic009G151400 Sobic009G151400 Sobic002G428900--Sobic009G151400 Sobic001G408800 Sobic001G408800 Sobic002G428900--Sobic001G408800 Sobic004G296800 Sobic004G296800 Sobic002G428900--Sobic004G296800 Sobic002G428900--Sobic003G165800 Sobic009G201900 Sobic009G201900 Sobic009G231100--Sobic009G201900 Sobic009G231100--Sobic002G225000 Sobic009G231100--Sobic002G377300 Sobic001G518200 Sobic001G518200 Sobic009G231100--Sobic001G518200 Sobic003G420900 Sobic003G420900 Sobic009G231100--Sobic003G420900 Sobic009G231100--Sobic003G223000 Sobic005G031000 Sobic005G031000 Sobic009G231100--Sobic005G031000 Sobic001G104300 Sobic001G104300 Sobic009G231100--Sobic001G104300 Sobic009G231100--Sobic005G022000 Sobic009G055900 Sobic009G055900 Sobic002G377300--Sobic009G055900 Sobic001G371700 Sobic001G371700 Sobic002G377300--Sobic001G371700 Sobic002G377300--Sobic010G165100 Sobic002G142500 Sobic002G142500 Sobic002G377300--Sobic002G142500 Sobic002G377300--Sobic009G231100 Sobic001G047200 Sobic001G047200 Sobic002G377300--Sobic001G047200 Sobic008G143600 Sobic008G143600 Sobic002G377300--Sobic008G143600 Sobic002G377300--Sobic002G225000 Sobic002G246000 Sobic002G246000 Sobic002G377300--Sobic002G246000 Sobic008G166050--Sobic002G388600 Sobic005G036500 Sobic005G036500 Sobic008G166050--Sobic005G036500 Sobic008G166050--Sobic003G148400 Sobic001G531000 Sobic001G531000 Sobic008G166050--Sobic001G531000 Sobic001G374900 Sobic001G374900 Sobic008G166050--Sobic001G374900 Sobic008G114700 Sobic008G114700 Sobic008G166050--Sobic008G114700 Sobic008G030900 Sobic008G030900 Sobic008G166050--Sobic008G030900 Sobic003G287000 Sobic003G287000 Sobic008G166050--Sobic003G287000 Sobic008G166050--Sobic002G377300 Sobic005G022000--Sobic002G078000 Sobic005G022000--Sobic001G104300 Sobic002G363500 Sobic002G363500 Sobic005G022000--Sobic002G363500 Sobic006G281066 Sobic006G281066 Sobic005G022000--Sobic006G281066 Sobic006G114300 Sobic006G114300 Sobic005G022000--Sobic006G114300 Sobic007G026200 Sobic007G026200 Sobic005G022000--Sobic007G026200 Sobic002G360200 Sobic002G360200 Sobic005G022000--Sobic002G360200 Sobic007G166600 Sobic007G166600 Sobic005G022000--Sobic007G166600 Sobic001G389500 Sobic001G389500 Sobic005G022000--Sobic001G389500 Sobic003G165800--Sobic001G104300 Sobic002G141900 Sobic002G141900 Sobic003G165800--Sobic002G141900 Sobic003G165800--Sobic003G420900 Sobic001G021500 Sobic001G021500 Sobic003G165800--Sobic001G021500 Sobic001G441200 Sobic001G441200 Sobic003G165800--Sobic001G441200 Sobic003G165800--Sobic006G281066 Sobic003G165800--Sobic005G022000 Sobic003G165800--Sobic009G055900 Sobic003G165800--Sobic002G363500 Sobic001G460000 Sobic001G460000 Sobic007G050600--Sobic001G460000 Sobic001G334900 Sobic001G334900 Sobic007G050600--Sobic001G334900 Sobic004G295700 Sobic004G295700 Sobic007G050600--Sobic004G295700 Sobic009G063400 Sobic009G063400 Sobic007G050600--Sobic009G063400 Sobic004G296200 Sobic004G296200 Sobic007G050600--Sobic004G296200 Sobic009G232200 Sobic009G232200 Sobic007G050600--Sobic009G232200 Sobic001G012600 Sobic001G012600 Sobic007G050600--Sobic001G012600 Sobic004G257700 Sobic004G257700 Sobic007G050600--Sobic004G257700 Sobic010G228100 Sobic010G228100 Sobic007G050600--Sobic010G228100 Sobic006G183200 Sobic006G183200 Sobic010G054000--Sobic006G183200 Sobic004G203500 Sobic004G203500 Sobic010G054000--Sobic004G203500 Sobic007G069200 Sobic007G069200 Sobic010G054000--Sobic007G069200 Sobic010G054000--Sobic002G388600 Sobic007G203000 Sobic007G203000 Sobic010G054000--Sobic007G203000 Sobic004G295500 Sobic004G295500 Sobic010G054000--Sobic004G295500 Sobic010G054000--Sobic002G225000 Sobic003G421201 Sobic003G421201 Sobic010G054000--Sobic003G421201 Sobic010G054000--Sobic010G059200
Octagon: transcription factors


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