Gene annotation
Transcriptome id Sobic.005G022000.1
Synonym Sb05g001860
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Mpv17 / PMP22 family domain containing protein, expressed
UniProt C5Y3Z5
Pfam PF04117
Panther DB PTHR11266 PTHR11266:SF40
NCBI CDD KOG1944; Peroxisomal membrane protein MPV17 and related proteins
KEGG Orthology K13347; PXMP2, peroxisomal membrane protein 2
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G19750 : Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
RAP-DB (Rice) LOC_Os12g03430.1 : Mpv17 / PMP22 family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033379
Brachypodium KQJ92452
Barley HORVU0Hr1G010800.9 , HORVU0Hr1G010800.8 , HORVU0Hr1G010800.3 , HORVU0Hr1G010800.2 , HORVU0Hr1G010800.1 , HORVU0Hr1G010800.7 , HORVU0Hr1G010800.6 , HORVU0Hr1G010800.5 , HORVU0Hr1G010800.4
Wheat TraesCS5A02G140800 , TraesCS5D02G151700 , TraesCS5B02G139100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G022000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G078000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KHG/KDPG aldolase, putative, expressed -
2 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
3 Sobic.002G363500 RNA methyltransferase, TrmH family protein, putative, expressed -
4 Sobic.006G281066 - -
5 Sobic.006G114300 pentatricopeptide, putative, expressed -
6 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
7 Sobic.002G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.007G166600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
9 Sobic.001G389500 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
10 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
11 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
12 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
13 Sobic.009G161100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
14 Sobic.010G134500 exonuclease, putative, expressed -
15 Sobic.003G136400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
16 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
17 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
18 Sobic.001G158400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@recA protein, putative, expressed K03553: recombination protein RecA
19 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
20 Sobic.001G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Homologous to Arabidopsis heme oxygenase 1 (AtHO1)(PubMedID : 11402195)@heme oxygenase 2, putative, expressed -


Gene co-expression network
sample Sobic005G022000 Sobic005G022000 Sobic002G078000 Sobic002G078000 Sobic005G022000--Sobic002G078000 Sobic001G104300 Sobic001G104300 Sobic005G022000--Sobic001G104300 Sobic002G363500 Sobic002G363500 Sobic005G022000--Sobic002G363500 Sobic006G281066 Sobic006G281066 Sobic005G022000--Sobic006G281066 Sobic006G114300 Sobic006G114300 Sobic005G022000--Sobic006G114300 Sobic007G026200 Sobic007G026200 Sobic005G022000--Sobic007G026200 Sobic002G360200 Sobic002G360200 Sobic005G022000--Sobic002G360200 Sobic007G166600 Sobic007G166600 Sobic005G022000--Sobic007G166600 Sobic001G389500 Sobic001G389500 Sobic005G022000--Sobic001G389500 Sobic001G013900 Sobic001G013900 Sobic002G078000--Sobic001G013900 Sobic003G333700 Sobic003G333700 Sobic002G078000--Sobic003G333700 Sobic002G078000--Sobic001G104300 Sobic002G078000--Sobic005G022000 Sobic003G223000 Sobic003G223000 Sobic002G078000--Sobic003G223000 Sobic002G078000--Sobic002G360200 Sobic001G188600 Sobic001G188600 Sobic002G078000--Sobic001G188600 Sobic010G012900 Sobic010G012900 Sobic002G078000--Sobic010G012900 Sobic004G109000 Sobic004G109000 Sobic002G078000--Sobic004G109000 Sobic001G104300--Sobic002G078000 Sobic001G104300--Sobic006G281066 Sobic001G104300--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic001G104300--Sobic003G165800 Sobic004G070800 Sobic004G070800 Sobic001G104300--Sobic004G070800 Sobic001G104300--Sobic001G013900 Sobic001G104300--Sobic003G333700 Sobic010G134500 Sobic010G134500 Sobic001G104300--Sobic010G134500 Sobic001G104300--Sobic004G109000 Sobic002G363500--Sobic006G281066 Sobic002G363500--Sobic005G022000 Sobic001G395300 Sobic001G395300 Sobic002G363500--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G363500--Sobic001G437200 Sobic002G363500--Sobic001G104300 Sobic003G298400 Sobic003G298400 Sobic002G363500--Sobic003G298400 Sobic002G363500--Sobic010G134500 Sobic002G363500--Sobic003G165800 Sobic006G237100 Sobic006G237100 Sobic002G363500--Sobic006G237100 Sobic004G214400 Sobic004G214400 Sobic006G281066--Sobic004G214400 Sobic006G281066--Sobic001G104300 Sobic001G543700 Sobic001G543700 Sobic006G281066--Sobic001G543700 Sobic006G281066--Sobic002G363500 Sobic006G281066--Sobic001G395300 Sobic003G236300 Sobic003G236300 Sobic006G281066--Sobic003G236300 Sobic010G027200 Sobic010G027200 Sobic006G281066--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic006G281066--Sobic002G140000 Sobic001G321400 Sobic001G321400 Sobic006G281066--Sobic001G321400 Sobic006G114300--Sobic001G188600 Sobic001G357200 Sobic001G357200 Sobic006G114300--Sobic001G357200 Sobic006G114300--Sobic004G109000 Sobic001G069500 Sobic001G069500 Sobic006G114300--Sobic001G069500 Sobic006G114300--Sobic010G012900 Sobic003G383500 Sobic003G383500 Sobic006G114300--Sobic003G383500 Sobic004G253800 Sobic004G253800 Sobic006G114300--Sobic004G253800 Sobic007G211100 Sobic007G211100 Sobic006G114300--Sobic007G211100 Sobic007G013400 Sobic007G013400 Sobic006G114300--Sobic007G013400 Sobic007G026200--Sobic001G069500 Sobic007G026200--Sobic007G211100 Sobic007G026200--Sobic001G188600 Sobic007G026200--Sobic004G109000 Sobic002G189600 Sobic002G189600 Sobic007G026200--Sobic002G189600 Sobic007G026200--Sobic006G281066 Sobic007G026200--Sobic010G012900 Sobic007G026200--Sobic001G357200 Sobic004G296800 Sobic004G296800 Sobic007G026200--Sobic004G296800 Sobic001G172300 Sobic001G172300 Sobic002G360200--Sobic001G172300 Sobic002G360200--Sobic010G012900 Sobic002G360200--Sobic001G013900 Sobic002G360200--Sobic004G253800 Sobic002G360200--Sobic001G188600 Sobic010G011200 Sobic010G011200 Sobic002G360200--Sobic010G011200 Sobic002G360200--Sobic006G114300 Sobic002G360200--Sobic002G078000 Sobic002G360200--Sobic001G357200 Sobic008G135701 Sobic008G135701 Sobic007G166600--Sobic008G135701 Sobic004G319800 Sobic004G319800 Sobic007G166600--Sobic004G319800 Sobic009G055900 Sobic009G055900 Sobic007G166600--Sobic009G055900 Sobic007G166600--Sobic001G104300 Sobic007G166600--Sobic005G022000 Sobic007G166600--Sobic007G026200 Sobic005G105850 Sobic005G105850 Sobic007G166600--Sobic005G105850 Sobic007G166600--Sobic007G211100 Sobic010G202700 Sobic010G202700 Sobic007G166600--Sobic010G202700 Sobic001G389500--Sobic005G022000 Sobic001G389500--Sobic002G363500 Sobic001G099800 Sobic001G099800 Sobic001G389500--Sobic001G099800 Sobic002G190800 Sobic002G190800 Sobic001G389500--Sobic002G190800 Sobic001G389500--Sobic001G172300 Sobic001G389500--Sobic007G026200 Sobic001G389500--Sobic001G395300 Sobic001G389500--Sobic010G012900 Sobic003G425100 Sobic003G425100 Sobic001G389500--Sobic003G425100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.