Gene annotation
Transcriptome id Sobic.004G109000.1
Synonym Sb04g008910
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
chalcone isomerase 3, putative, expressed
UniProt C5XZ21
Pfam PF02431
Panther DB PTHR28039 PTHR28039:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016872; intramolecular lyase activity


Orthologs (automatic annotation)
TAIR AT1G53520 : Chalcone-flavanone isomerase family protein
RAP-DB (Rice) LOC_Os02g21520.1 : chalcone isomerase 3, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
2 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
3 Sobic.006G114300 pentatricopeptide, putative, expressed -
4 Sobic.003G383500 rhodanese-like, putative, expressed -
5 Sobic.009G059100 Cupin domain containing protein, expressed -
6 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
7 Sobic.006G025700 - -
8 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
9 Sobic.001G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed -
10 Sobic.003G157500 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
11 Sobic.004G253800 - -
12 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
13 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
14 Sobic.006G060500 expressed protein -
15 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
16 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
18 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
19 Sobic.003G383600 - -
20 Sobic.009G098100 T-complex protein, putative, expressed -


Gene co-expression network
sample Sobic004G109000 Sobic004G109000 Sobic001G188600 Sobic001G188600 Sobic004G109000--Sobic001G188600 Sobic007G211100 Sobic007G211100 Sobic004G109000--Sobic007G211100 Sobic006G114300 Sobic006G114300 Sobic004G109000--Sobic006G114300 Sobic003G383500 Sobic003G383500 Sobic004G109000--Sobic003G383500 Sobic009G059100 Sobic009G059100 Sobic004G109000--Sobic009G059100 Sobic001G069500 Sobic001G069500 Sobic004G109000--Sobic001G069500 Sobic006G025700 Sobic006G025700 Sobic004G109000--Sobic006G025700 Sobic007G013400 Sobic007G013400 Sobic004G109000--Sobic007G013400 Sobic001G215300 Sobic001G215300 Sobic004G109000--Sobic001G215300 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G357200 Sobic001G357200 Sobic001G188600--Sobic001G357200 Sobic009G098100 Sobic009G098100 Sobic001G188600--Sobic009G098100 Sobic010G012900 Sobic010G012900 Sobic001G188600--Sobic010G012900 Sobic001G188600--Sobic004G109000 Sobic001G188600--Sobic007G211100 Sobic004G253800 Sobic004G253800 Sobic001G188600--Sobic004G253800 Sobic008G030000 Sobic008G030000 Sobic001G188600--Sobic008G030000 Sobic007G211100--Sobic001G069500 Sobic007G211100--Sobic007G013400 Sobic007G211100--Sobic003G383500 Sobic009G001500 Sobic009G001500 Sobic007G211100--Sobic009G001500 Sobic007G211100--Sobic004G109000 Sobic007G211100--Sobic001G188600 Sobic003G295800 Sobic003G295800 Sobic007G211100--Sobic003G295800 Sobic008G123600 Sobic008G123600 Sobic007G211100--Sobic008G123600 Sobic007G211100--Sobic009G098100 Sobic006G114300--Sobic001G188600 Sobic006G114300--Sobic001G357200 Sobic006G114300--Sobic004G109000 Sobic006G114300--Sobic001G069500 Sobic006G114300--Sobic010G012900 Sobic006G114300--Sobic003G383500 Sobic006G114300--Sobic004G253800 Sobic006G114300--Sobic007G211100 Sobic006G114300--Sobic007G013400 Sobic003G383500--Sobic007G013400 Sobic003G383500--Sobic009G001500 Sobic003G383500--Sobic003G295800 Sobic003G383500--Sobic007G211100 Sobic003G261200 Sobic003G261200 Sobic003G383500--Sobic003G261200 Sobic004G044000 Sobic004G044000 Sobic003G383500--Sobic004G044000 Sobic003G383600 Sobic003G383600 Sobic003G383500--Sobic003G383600 Sobic005G110481 Sobic005G110481 Sobic003G383500--Sobic005G110481 Sobic003G383500--Sobic004G109000 Sobic006G172700 Sobic006G172700 Sobic009G059100--Sobic006G172700 Sobic003G157500 Sobic003G157500 Sobic009G059100--Sobic003G157500 Sobic009G059100--Sobic006G025700 Sobic001G003600 Sobic001G003600 Sobic009G059100--Sobic001G003600 Sobic002G020100 Sobic002G020100 Sobic009G059100--Sobic002G020100 Sobic005G200600 Sobic005G200600 Sobic009G059100--Sobic005G200600 Sobic005G056201 Sobic005G056201 Sobic009G059100--Sobic005G056201 Sobic003G096100 Sobic003G096100 Sobic009G059100--Sobic003G096100 Sobic001G435600 Sobic001G435600 Sobic009G059100--Sobic001G435600 Sobic001G069500--Sobic009G098100 Sobic001G069500--Sobic001G188600 Sobic001G069500--Sobic007G211100 Sobic001G069500--Sobic003G295800 Sobic001G069500--Sobic003G383600 Sobic001G069500--Sobic008G123600 Sobic001G069500--Sobic009G001500 Sobic001G069500--Sobic008G030000 Sobic001G069500--Sobic007G013400 Sobic006G025700--Sobic003G157500 Sobic006G025700--Sobic009G059100 Sobic006G025700--Sobic002G020100 Sobic006G025700--Sobic004G253800 Sobic006G025700--Sobic001G003600 Sobic002G190100 Sobic002G190100 Sobic006G025700--Sobic002G190100 Sobic006G025700--Sobic001G435600 Sobic006G025700--Sobic004G109000 Sobic006G025700--Sobic003G096100 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100 Sobic001G215300--Sobic004G109000 Sobic001G142400 Sobic001G142400 Sobic001G215300--Sobic001G142400 Sobic002G064400 Sobic002G064400 Sobic001G215300--Sobic002G064400 Sobic001G215300--Sobic002G190100 Sobic008G130700 Sobic008G130700 Sobic001G215300--Sobic008G130700 Sobic001G236800 Sobic001G236800 Sobic001G215300--Sobic001G236800 Sobic001G215300--Sobic001G188600 Sobic007G090415 Sobic007G090415 Sobic001G215300--Sobic007G090415 Sobic001G215300--Sobic006G114300
Octagon: transcription factors


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