Gene annotation
Transcriptome id Sobic.007G013400.2
Synonym Sb07g001230, HFP108, cpRRF, RRF, AtcpRRF
Functional annotation ribosome recycling factor, putative, expressed
UniProt A0A1B6PEY5
Pfam PF01765
Panther DB PTHR20982 PTHR20982:SF8
NCBI CDD KOG4759; Ribosome recycling factor
KEGG Orthology K02838; frr, MRRF, ribosome recycling factor
Gene Ontology GO:0006412; translation


Orthologs (automatic annotation)
TAIR AT3G63190 : ribosome recycling factor, chloroplast precursor
RAP-DB (Rice) LOC_Os07g38300.1 : ribosome recycling factor, putative, expressed
MaizeGDB (Corn) Zm00025a040222 , Zm00025a030279
Brachypodium KQK15638 , KQK15639 , PNT74897
Barley -
Wheat TraesCS2A02G197900 , TraesCS2B02G225300 , TraesCS2B02G225300 , TraesCS2D02G205900 , TraesCS2D02G205900
Populus PNT47932 , PNT47931 , PNT47930 , PNT47929


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cDNA sequences
Sobic.007G013400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G383500 rhodanese-like, putative, expressed -
2 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
3 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
4 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
5 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
6 Sobic.002G251400 expressed protein -
7 Sobic.003G383600 - -
8 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
9 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
10 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
11 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
12 Sobic.005G110481 - -
13 Sobic.004G317900 expressed protein -
14 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
15 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
16 Sobic.002G242600 expressed protein -
17 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.010G215500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
19 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
20 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28


Gene co-expression network
sample Sobic007G013400 Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic007G013400--Sobic003G383500 Sobic003G295800 Sobic003G295800 Sobic007G013400--Sobic003G295800 Sobic009G001500 Sobic009G001500 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic003G383600 Sobic003G383600 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G211100 Sobic007G211100 Sobic007G013400--Sobic007G211100 Sobic003G383500--Sobic007G013400 Sobic003G383500--Sobic009G001500 Sobic003G383500--Sobic003G295800 Sobic003G383500--Sobic007G211100 Sobic003G383500--Sobic003G261200 Sobic004G044000 Sobic004G044000 Sobic003G383500--Sobic004G044000 Sobic003G383500--Sobic003G383600 Sobic005G110481 Sobic005G110481 Sobic003G383500--Sobic005G110481 Sobic004G109000 Sobic004G109000 Sobic003G383500--Sobic004G109000 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic009G001500--Sobic004G044000 Sobic009G001500--Sobic003G383600 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic001G383900 Sobic001G383900 Sobic009G001500--Sobic001G383900 Sobic003G261200--Sobic007G013400 Sobic009G130800 Sobic009G130800 Sobic003G261200--Sobic009G130800 Sobic003G261200--Sobic003G383500 Sobic003G261200--Sobic003G295800 Sobic010G095200 Sobic010G095200 Sobic003G261200--Sobic010G095200 Sobic003G261200--Sobic009G001500 Sobic007G090537 Sobic007G090537 Sobic003G261200--Sobic007G090537 Sobic003G261200--Sobic007G211100 Sobic001G069500 Sobic001G069500 Sobic003G261200--Sobic001G069500 Sobic003G386300 Sobic003G386300 Sobic001G475600--Sobic003G386300 Sobic001G475600--Sobic007G013400 Sobic001G475600--Sobic001G040000 Sobic001G475600--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic001G475600--Sobic004G335800 Sobic001G475600--Sobic010G095200 Sobic001G475600--Sobic003G295800 Sobic001G122400 Sobic001G122400 Sobic001G475600--Sobic001G122400 Sobic007G143700 Sobic007G143700 Sobic001G475600--Sobic007G143700 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic001G240000 Sobic001G240000 Sobic002G251400--Sobic001G240000 Sobic002G251400--Sobic003G386300 Sobic002G251400--Sobic001G122400 Sobic002G251400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic002G251400--Sobic001G527100 Sobic002G251400--Sobic007G013400 Sobic002G251400--Sobic003G295800 Sobic003G383600--Sobic003G295800 Sobic003G383600--Sobic007G013400 Sobic008G123600 Sobic008G123600 Sobic003G383600--Sobic008G123600 Sobic003G383600--Sobic001G069500 Sobic003G383600--Sobic009G001500 Sobic003G383600--Sobic008G030000 Sobic003G383600--Sobic009G098100 Sobic010G215500 Sobic010G215500 Sobic003G383600--Sobic010G215500 Sobic003G383600--Sobic003G383500 Sobic001G040000--Sobic004G335800 Sobic001G391400 Sobic001G391400 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic001G040000--Sobic003G295800 Sobic001G040000--Sobic002G251400 Sobic004G116100 Sobic004G116100 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic007G211100--Sobic001G069500 Sobic007G211100--Sobic007G013400 Sobic007G211100--Sobic003G383500 Sobic007G211100--Sobic009G001500 Sobic007G211100--Sobic004G109000 Sobic001G188600 Sobic001G188600 Sobic007G211100--Sobic001G188600 Sobic007G211100--Sobic003G295800 Sobic007G211100--Sobic008G123600 Sobic007G211100--Sobic009G098100
Octagon: transcription factors


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