Gene annotation
Transcriptome id Sobic.003G261200.1,Sobic.003G261200.2
Synonym Sb03g031530, pde194
Functional annotation formyl transferase, putative, expressed
UniProt A0A1W0VZ11 , C5XGU2
Pfam PF02911 PF00551 PF00551
Panther DB PTHR11138 PTHR11138:SF3
NCBI CDD KOG3082; Methionyl-tRNA formyltransferase
KEGG Orthology K00604; MTFMT, methionyl-tRNA formyltransferase
Gene Ontology GO:0016742; hydroxymethyl-, formyl- and related transferase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G66520 : formyltransferase, putative
RAP-DB (Rice) LOC_Os01g49330.1 : formyl transferase, putative, expressed
MaizeGDB (Corn) Zm00025a027987
Brachypodium KQK09242
Barley HORVU3Hr1G063720.9 , HORVU3Hr1G063720.7 , HORVU3Hr1G063720.6 , HORVU3Hr1G063720.5 , HORVU3Hr1G063720.4 , HORVU3Hr1G063720.3 , HORVU3Hr1G063720.2 , HORVU3Hr1G063710.24 , HORVU3Hr1G063720.28 , HORVU3Hr1G063720.29 , HORVU3Hr1G063720.26 , HORVU3Hr1G063720.27 , HORVU3Hr1G063720.22 , HORVU3Hr1G063720.20 , HORVU3Hr1G063720.40 , HORVU3Hr1G063720.41 , HORVU3Hr1G063720.42 , HORVU3Hr1G063720.43 , HORVU3Hr1G063790.14 , HORVU3Hr1G063790.11 , HORVU3Hr1G063710.14 , HORVU3Hr1G063710.15 , HORVU3Hr1G063710.16 , HORVU3Hr1G063710.17 , HORVU3Hr1G063710.10 , HORVU3Hr1G063710.11 , HORVU3Hr1G063710.12 , HORVU3Hr1G063710.13 , HORVU3Hr1G063710.18 , HORVU3Hr1G063710.19 , HORVU3Hr1G063790.4 , HORVU3Hr1G063790.2 , HORVU3Hr1G063710.29 , HORVU3Hr1G063710.28 , HORVU3Hr1G063710.21 , HORVU3Hr1G063710.20 , HORVU3Hr1G063710.23 , HORVU3Hr1G063710.22 , HORVU3Hr1G063710.25 , HORVU3Hr1G063720.24 , HORVU3Hr1G063710.27 , HORVU3Hr1G063720.25 , HORVU3Hr1G063720.23 , HORVU3Hr1G063720.17 , HORVU3Hr1G063720.16 , HORVU3Hr1G063720.15 , HORVU3Hr1G063720.14 , HORVU3Hr1G063720.13 , HORVU3Hr1G063720.12 , HORVU3Hr1G063720.11 , HORVU3Hr1G063720.10 , HORVU3Hr1G063720.19 , HORVU3Hr1G063720.18 , HORVU3Hr1G063710.34 , HORVU3Hr1G063710.32 , HORVU3Hr1G063710.33 , HORVU3Hr1G063710.30 , HORVU3Hr1G063710.31 , HORVU3Hr1G063710.8 , HORVU3Hr1G063710.9 , HORVU3Hr1G063710.6 , HORVU3Hr1G063710.7 , HORVU3Hr1G063710.4 , HORVU3Hr1G063710.5 , HORVU3Hr1G063710.2 , HORVU3Hr1G063710.3 , HORVU3Hr1G063710.1 , HORVU3Hr1G063720.39 , HORVU3Hr1G063720.38 , HORVU3Hr1G063720.31 , HORVU3Hr1G063720.30 , HORVU3Hr1G063720.33 , HORVU3Hr1G063720.32 , HORVU3Hr1G063720.35 , HORVU3Hr1G063720.34 , HORVU3Hr1G063720.37 , HORVU3Hr1G063720.36
Wheat TraesCS3A02G263800 , TraesCS3D02G263700 , TraesCS3D02G263700 , TraesCS3D02G263700 , TraesCS3B02G297000 , TraesCS3B02G297000 , TraesCS3A02G263800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
2 Sobic.009G130800 tat pathway signal sequence family protein, expressed -
3 Sobic.003G383500 rhodanese-like, putative, expressed -
4 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
5 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
6 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
7 Sobic.007G090537 - K10956: protein transport protein SEC61 subunit alpha
8 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
9 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
10 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
11 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.010G215500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
13 Sobic.004G317900 expressed protein -
14 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
15 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
16 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
17 Sobic.003G383600 - -
18 Sobic.002G251400 expressed protein -
19 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
20 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase


Gene co-expression network
sample Sobic003G261200 Sobic003G261200 Sobic007G013400 Sobic007G013400 Sobic003G261200--Sobic007G013400 Sobic009G130800 Sobic009G130800 Sobic003G261200--Sobic009G130800 Sobic003G383500 Sobic003G383500 Sobic003G261200--Sobic003G383500 Sobic003G295800 Sobic003G295800 Sobic003G261200--Sobic003G295800 Sobic010G095200 Sobic010G095200 Sobic003G261200--Sobic010G095200 Sobic009G001500 Sobic009G001500 Sobic003G261200--Sobic009G001500 Sobic007G090537 Sobic007G090537 Sobic003G261200--Sobic007G090537 Sobic007G211100 Sobic007G211100 Sobic003G261200--Sobic007G211100 Sobic001G069500 Sobic001G069500 Sobic003G261200--Sobic001G069500 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic003G383600 Sobic003G383600 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100 Sobic009G130800--Sobic007G090537 Sobic009G130800--Sobic003G261200 Sobic009G130800--Sobic010G095200 Sobic009G130800--Sobic007G013400 Sobic009G130800--Sobic003G295800 Sobic004G164100 Sobic004G164100 Sobic009G130800--Sobic004G164100 Sobic009G130800--Sobic009G001500 Sobic009G130800--Sobic001G475600 Sobic009G130800--Sobic007G211100 Sobic003G383500--Sobic007G013400 Sobic003G383500--Sobic009G001500 Sobic003G383500--Sobic003G295800 Sobic003G383500--Sobic007G211100 Sobic003G383500--Sobic003G261200 Sobic004G044000 Sobic004G044000 Sobic003G383500--Sobic004G044000 Sobic003G383500--Sobic003G383600 Sobic005G110481 Sobic005G110481 Sobic003G383500--Sobic005G110481 Sobic004G109000 Sobic004G109000 Sobic003G383500--Sobic004G109000 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500 Sobic003G386300 Sobic003G386300 Sobic010G095200--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic010G095200--Sobic001G122400 Sobic001G240000 Sobic001G240000 Sobic010G095200--Sobic001G240000 Sobic010G095200--Sobic007G090537 Sobic010G095200--Sobic004G164100 Sobic001G527100 Sobic001G527100 Sobic010G095200--Sobic001G527100 Sobic010G095200--Sobic002G251400 Sobic002G198000 Sobic002G198000 Sobic010G095200--Sobic002G198000 Sobic010G095200--Sobic009G130800 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic009G001500--Sobic004G044000 Sobic009G001500--Sobic003G383600 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic001G383900 Sobic001G383900 Sobic009G001500--Sobic001G383900 Sobic007G090537--Sobic009G130800 Sobic007G090537--Sobic010G095200 Sobic007G090537--Sobic003G261200 Sobic003G292300 Sobic003G292300 Sobic007G090537--Sobic003G292300 Sobic007G171800 Sobic007G171800 Sobic007G090537--Sobic007G171800 Sobic003G225100 Sobic003G225100 Sobic007G090537--Sobic003G225100 Sobic007G090537--Sobic005G110481 Sobic007G090537--Sobic004G164100 Sobic001G058400 Sobic001G058400 Sobic007G090537--Sobic001G058400 Sobic007G211100--Sobic001G069500 Sobic007G211100--Sobic007G013400 Sobic007G211100--Sobic003G383500 Sobic007G211100--Sobic009G001500 Sobic007G211100--Sobic004G109000 Sobic001G188600 Sobic001G188600 Sobic007G211100--Sobic001G188600 Sobic007G211100--Sobic003G295800 Sobic008G123600 Sobic008G123600 Sobic007G211100--Sobic008G123600 Sobic007G211100--Sobic009G098100 Sobic001G069500--Sobic009G098100 Sobic001G069500--Sobic001G188600 Sobic001G069500--Sobic007G211100 Sobic001G069500--Sobic003G295800 Sobic001G069500--Sobic003G383600 Sobic001G069500--Sobic008G123600 Sobic001G069500--Sobic009G001500 Sobic001G069500--Sobic008G030000 Sobic001G069500--Sobic007G013400
Octagon: transcription factors


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