Gene annotation
Transcriptome id Sobic.009G130800.1
Synonym Sb09g019730
Functional annotation tat pathway signal sequence family protein, expressed
UniProt C5YXN0
Pfam PF01789
Panther DB PTHR37764 PTHR37764:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT5G27390 : Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
RAP-DB (Rice) LOC_Os05g33300.1 : tat pathway signal sequence family protein, expressed
MaizeGDB (Corn) Zm00025a037024
Brachypodium KQJ86767
Barley -
Wheat TraesCSU02G075800 , TraesCS5B02G112300 , TraesCS5A02G109600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G090537 - K10956: protein transport protein SEC61 subunit alpha
2 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
3 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
4 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
5 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
6 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
8 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
9 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
10 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
11 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
12 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
13 Sobic.004G019300 terpene synthase, putative, expressed K15086: (3S)-linalool synthase
14 Sobic.003G386300 expressed protein -
15 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.002G251400 expressed protein -
17 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
18 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
19 Sobic.010G215500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
20 Sobic.003G157400 TPR repeat, putative, expressed -


Gene co-expression network
sample Sobic009G130800 Sobic009G130800 Sobic007G090537 Sobic007G090537 Sobic009G130800--Sobic007G090537 Sobic003G261200 Sobic003G261200 Sobic009G130800--Sobic003G261200 Sobic010G095200 Sobic010G095200 Sobic009G130800--Sobic010G095200 Sobic007G013400 Sobic007G013400 Sobic009G130800--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic009G130800--Sobic003G295800 Sobic004G164100 Sobic004G164100 Sobic009G130800--Sobic004G164100 Sobic009G001500 Sobic009G001500 Sobic009G130800--Sobic009G001500 Sobic001G475600 Sobic001G475600 Sobic009G130800--Sobic001G475600 Sobic007G211100 Sobic007G211100 Sobic009G130800--Sobic007G211100 Sobic007G090537--Sobic009G130800 Sobic007G090537--Sobic010G095200 Sobic007G090537--Sobic003G261200 Sobic003G292300 Sobic003G292300 Sobic007G090537--Sobic003G292300 Sobic007G171800 Sobic007G171800 Sobic007G090537--Sobic007G171800 Sobic003G225100 Sobic003G225100 Sobic007G090537--Sobic003G225100 Sobic005G110481 Sobic005G110481 Sobic007G090537--Sobic005G110481 Sobic007G090537--Sobic004G164100 Sobic001G058400 Sobic001G058400 Sobic007G090537--Sobic001G058400 Sobic003G261200--Sobic007G013400 Sobic003G261200--Sobic009G130800 Sobic003G383500 Sobic003G383500 Sobic003G261200--Sobic003G383500 Sobic003G261200--Sobic003G295800 Sobic003G261200--Sobic010G095200 Sobic003G261200--Sobic009G001500 Sobic003G261200--Sobic007G090537 Sobic003G261200--Sobic007G211100 Sobic001G069500 Sobic001G069500 Sobic003G261200--Sobic001G069500 Sobic003G386300 Sobic003G386300 Sobic010G095200--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic010G095200--Sobic001G122400 Sobic001G240000 Sobic001G240000 Sobic010G095200--Sobic001G240000 Sobic010G095200--Sobic007G090537 Sobic010G095200--Sobic004G164100 Sobic001G527100 Sobic001G527100 Sobic010G095200--Sobic001G527100 Sobic002G251400 Sobic002G251400 Sobic010G095200--Sobic002G251400 Sobic002G198000 Sobic002G198000 Sobic010G095200--Sobic002G198000 Sobic010G095200--Sobic009G130800 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic007G013400--Sobic003G261200 Sobic007G013400--Sobic001G475600 Sobic007G013400--Sobic002G251400 Sobic003G383600 Sobic003G383600 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500 Sobic004G164100--Sobic002G198000 Sobic004G164100--Sobic001G527100 Sobic004G164100--Sobic003G386300 Sobic004G164100--Sobic002G251400 Sobic004G164100--Sobic001G240000 Sobic004G164100--Sobic001G122400 Sobic004G164100--Sobic010G095200 Sobic004G335800 Sobic004G335800 Sobic004G164100--Sobic004G335800 Sobic004G326500 Sobic004G326500 Sobic004G164100--Sobic004G326500 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic004G044000 Sobic004G044000 Sobic009G001500--Sobic004G044000 Sobic009G001500--Sobic003G383600 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic001G383900 Sobic001G383900 Sobic009G001500--Sobic001G383900 Sobic001G475600--Sobic003G386300 Sobic001G475600--Sobic007G013400 Sobic001G475600--Sobic001G040000 Sobic001G475600--Sobic002G251400 Sobic001G475600--Sobic004G335800 Sobic001G475600--Sobic010G095200 Sobic001G475600--Sobic003G295800 Sobic001G475600--Sobic001G122400 Sobic007G143700 Sobic007G143700 Sobic001G475600--Sobic007G143700 Sobic007G211100--Sobic001G069500 Sobic007G211100--Sobic007G013400 Sobic007G211100--Sobic003G383500 Sobic007G211100--Sobic009G001500 Sobic004G109000 Sobic004G109000 Sobic007G211100--Sobic004G109000 Sobic001G188600 Sobic001G188600 Sobic007G211100--Sobic001G188600 Sobic007G211100--Sobic003G295800 Sobic008G123600 Sobic008G123600 Sobic007G211100--Sobic008G123600 Sobic007G211100--Sobic009G098100
Octagon: transcription factors


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