Gene annotation
Transcriptome id Sobic.003G328200.1
Synonym Sb03g037420
Functional annotation thylakoid lumenal 20 kDa protein, putative, expressed
UniProt A0A1B6Q6M2
Pfam PF01789
Panther DB PTHR31407 PTHR31407:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT3G56650 : Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
RAP-DB (Rice) LOC_Os01g59090.1 : thylakoid lumenal 20 kDa protein, putative, expressed
MaizeGDB (Corn) Zm00025a027168
Brachypodium -
Barley -
Wheat TraesCS3D02G326100
Populus -


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cDNA sequences
Sobic.003G328200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
2 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
3 Sobic.004G317900 expressed protein -
4 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
5 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
6 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
7 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
8 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
9 Sobic.003G386300 expressed protein -
10 Sobic.008G112300 -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed -
11 Sobic.010G215500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
12 Sobic.010G116500 expressed protein -
13 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
14 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
15 Sobic.002G251400 expressed protein -
16 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
17 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
18 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
19 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase


Gene co-expression network
sample Sobic003G328200 Sobic003G328200 Sobic001G527100 Sobic001G527100 Sobic003G328200--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic003G328200--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G328200--Sobic004G317900 Sobic003G246400 Sobic003G246400 Sobic003G328200--Sobic003G246400 Sobic001G240000 Sobic001G240000 Sobic003G328200--Sobic001G240000 Sobic003G295800 Sobic003G295800 Sobic003G328200--Sobic003G295800 Sobic004G116100 Sobic004G116100 Sobic003G328200--Sobic004G116100 Sobic004G311100 Sobic004G311100 Sobic003G328200--Sobic004G311100 Sobic003G386300 Sobic003G386300 Sobic003G328200--Sobic003G386300 Sobic001G527100--Sobic001G240000 Sobic001G122400 Sobic001G122400 Sobic001G527100--Sobic001G122400 Sobic002G198000 Sobic002G198000 Sobic001G527100--Sobic002G198000 Sobic004G335800 Sobic004G335800 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic004G164100 Sobic004G164100 Sobic001G527100--Sobic004G164100 Sobic001G391400 Sobic001G391400 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic001G527100--Sobic003G328200 Sobic001G040000--Sobic004G335800 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic001G040000--Sobic003G295800 Sobic002G251400 Sobic002G251400 Sobic001G040000--Sobic002G251400 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic004G317900--Sobic003G246400 Sobic007G185100 Sobic007G185100 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic010G233800 Sobic010G233800 Sobic004G317900--Sobic010G233800 Sobic001G027600 Sobic001G027600 Sobic004G317900--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic004G317900--Sobic001G453300 Sobic004G317900--Sobic003G328200 Sobic001G017000 Sobic001G017000 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500 Sobic003G246400--Sobic004G317900 Sobic001G411300 Sobic001G411300 Sobic003G246400--Sobic001G411300 Sobic003G256200 Sobic003G256200 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G246400--Sobic003G328200 Sobic004G298100 Sobic004G298100 Sobic003G246400--Sobic004G298100 Sobic001G191000 Sobic001G191000 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G393800 Sobic003G393800 Sobic003G246400--Sobic003G393800 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G240000--Sobic001G122400 Sobic001G240000--Sobic003G386300 Sobic001G240000--Sobic001G391400 Sobic001G240000--Sobic002G251400 Sobic001G240000--Sobic004G335800 Sobic001G240000--Sobic003G328200 Sobic001G240000--Sobic002G198000 Sobic007G013400 Sobic007G013400 Sobic003G295800--Sobic007G013400 Sobic009G001500 Sobic009G001500 Sobic003G295800--Sobic009G001500 Sobic003G295800--Sobic001G040000 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic003G295800--Sobic001G017000 Sobic003G295800--Sobic001G027600 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500 Sobic004G116100--Sobic004G335800 Sobic004G116100--Sobic001G040000 Sobic004G116100--Sobic001G391400 Sobic004G116100--Sobic001G453300 Sobic004G116100--Sobic001G527100 Sobic004G116100--Sobic004G298100 Sobic004G116100--Sobic003G328200 Sobic004G116100--Sobic003G386300 Sobic004G116100--Sobic004G311100 Sobic008G112300 Sobic008G112300 Sobic004G311100--Sobic008G112300 Sobic007G143700 Sobic007G143700 Sobic004G311100--Sobic007G143700 Sobic004G311100--Sobic003G386300 Sobic004G311100--Sobic004G335800 Sobic004G311100--Sobic001G122400 Sobic004G311100--Sobic001G527100 Sobic004G311100--Sobic004G116100 Sobic004G311100--Sobic003G328200 Sobic002G271700 Sobic002G271700 Sobic004G311100--Sobic002G271700 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic010G095200 Sobic010G095200 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic003G386300--Sobic004G164100 Sobic001G475600 Sobic001G475600 Sobic003G386300--Sobic001G475600
Octagon: transcription factors


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