Gene annotation
Transcriptome id Sobic.010G215500.1
Synonym Sb10g026180
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A194YLR2
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF343
NCBI CDD -
KEGG Orthology K17710; pentatricopeptide repeat domain-containing protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G18940 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g19380.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a042005 , Zm00025a046215
Brachypodium KQK16908
Barley HORVU7Hr1G111000.5
Wheat TraesCS7B02G401800 , TraesCS7B02G401800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
2 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
3 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
4 Sobic.003G383600 - -
5 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
6 Sobic.002G297900 CDGSH iron sulfur domain-containing protein 1, putative, expressed -
7 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
8 Sobic.004G317900 expressed protein -
9 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
10 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
11 Sobic.002G251400 expressed protein -
12 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
13 Sobic.004G019300 terpene synthase, putative, expressed K15086: (3S)-linalool synthase
14 Sobic.003G386300 expressed protein -
15 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
16 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
17 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
18 Sobic.009G098100 T-complex protein, putative, expressed -
19 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
20 Sobic.008G112300 -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed -


Gene co-expression network
sample Sobic010G215500 Sobic010G215500 Sobic003G295800 Sobic003G295800 Sobic010G215500--Sobic003G295800 Sobic007G185100 Sobic007G185100 Sobic010G215500--Sobic007G185100 Sobic003G328200 Sobic003G328200 Sobic010G215500--Sobic003G328200 Sobic003G383600 Sobic003G383600 Sobic010G215500--Sobic003G383600 Sobic007G013400 Sobic007G013400 Sobic010G215500--Sobic007G013400 Sobic002G297900 Sobic002G297900 Sobic010G215500--Sobic002G297900 Sobic004G076000 Sobic004G076000 Sobic010G215500--Sobic004G076000 Sobic004G317900 Sobic004G317900 Sobic010G215500--Sobic004G317900 Sobic004G335800 Sobic004G335800 Sobic010G215500--Sobic004G335800 Sobic003G295800--Sobic007G013400 Sobic009G001500 Sobic009G001500 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500 Sobic007G185100--Sobic004G317900 Sobic010G255600 Sobic010G255600 Sobic007G185100--Sobic010G255600 Sobic010G233800 Sobic010G233800 Sobic007G185100--Sobic010G233800 Sobic007G185100--Sobic010G215500 Sobic007G185100--Sobic003G295800 Sobic007G170800 Sobic007G170800 Sobic007G185100--Sobic007G170800 Sobic007G185100--Sobic003G328200 Sobic008G030000 Sobic008G030000 Sobic007G185100--Sobic008G030000 Sobic007G185100--Sobic004G076000 Sobic001G527100 Sobic001G527100 Sobic003G328200--Sobic001G527100 Sobic003G328200--Sobic001G040000 Sobic003G328200--Sobic004G317900 Sobic003G246400 Sobic003G246400 Sobic003G328200--Sobic003G246400 Sobic001G240000 Sobic001G240000 Sobic003G328200--Sobic001G240000 Sobic003G328200--Sobic003G295800 Sobic004G116100 Sobic004G116100 Sobic003G328200--Sobic004G116100 Sobic004G311100 Sobic004G311100 Sobic003G328200--Sobic004G311100 Sobic003G386300 Sobic003G386300 Sobic003G328200--Sobic003G386300 Sobic003G383600--Sobic003G295800 Sobic003G383600--Sobic007G013400 Sobic008G123600 Sobic008G123600 Sobic003G383600--Sobic008G123600 Sobic001G069500 Sobic001G069500 Sobic003G383600--Sobic001G069500 Sobic003G383600--Sobic009G001500 Sobic003G383600--Sobic008G030000 Sobic003G383600--Sobic009G098100 Sobic003G383600--Sobic010G215500 Sobic003G383600--Sobic003G383500 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic007G013400--Sobic003G383600 Sobic007G013400--Sobic001G040000 Sobic007G211100 Sobic007G211100 Sobic007G013400--Sobic007G211100 Sobic008G112300 Sobic008G112300 Sobic002G297900--Sobic008G112300 Sobic002G297900--Sobic004G076000 Sobic002G297900--Sobic003G295800 Sobic002G297900--Sobic010G215500 Sobic002G297900--Sobic008G123600 Sobic002G297900--Sobic003G328200 Sobic002G297900--Sobic007G185100 Sobic002G297900--Sobic001G017000 Sobic002G297900--Sobic004G311100 Sobic001G323801 Sobic001G323801 Sobic004G076000--Sobic001G323801 Sobic009G115050 Sobic009G115050 Sobic004G076000--Sobic009G115050 Sobic001G003600 Sobic001G003600 Sobic004G076000--Sobic001G003600 Sobic004G076000--Sobic008G123600 Sobic004G076000--Sobic001G017000 Sobic002G020100 Sobic002G020100 Sobic004G076000--Sobic002G020100 Sobic005G110436 Sobic005G110436 Sobic004G076000--Sobic005G110436 Sobic006G172700 Sobic006G172700 Sobic004G076000--Sobic006G172700 Sobic004G076000--Sobic003G295800 Sobic004G317900--Sobic003G246400 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic004G317900--Sobic010G233800 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic004G317900--Sobic003G328200 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500 Sobic004G335800--Sobic001G040000 Sobic001G122400 Sobic001G122400 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G335800--Sobic004G116100 Sobic003G324700 Sobic003G324700 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic001G391400 Sobic001G391400 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000
Octagon: transcription factors


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