Gene annotation
Transcriptome id Sobic.009G098100.1
Synonym CH-CPN60A, Sb09g014430, SLP, CPN60A
Functional annotation T-complex protein, putative, expressed
UniProt C5YW53
Pfam PF00118
Panther DB PTHR11353 PTHR11353:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G28000 : chaperonin-60alpha
RAP-DB (Rice) LOC_Os12g17910.1 : T-complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a043494
Brachypodium KQK11974 , KQJ81757
Barley HORVU2Hr1G007840.11 , HORVU2Hr1G007840.10 , HORVU2Hr1G007840.13 , HORVU2Hr1G007840.12 , HORVU2Hr1G007840.15 , HORVU2Hr1G007840.14 , HORVU5Hr1G125130.1 , HORVU5Hr1G125130.3 , HORVU5Hr1G125130.2 , HORVU5Hr1G125130.4 , HORVU2Hr1G007840.5 , HORVU2Hr1G007840.4 , HORVU2Hr1G007840.7 , HORVU2Hr1G007840.6 , HORVU2Hr1G007840.1 , HORVU2Hr1G007840.3 , HORVU2Hr1G007840.2 , HORVU2Hr1G007840.9 , HORVU2Hr1G007840.8
Wheat TraesCSU02G009200 , TraesCS4A02G315500 , TraesCS4A02G315500 , TraesCS5B02G563900 , TraesCS5B02G563900 , TraesCS2D02G049500 , TraesCS5D02G550700 , TraesCS5D02G550700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
2 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
3 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
4 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
5 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
7 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
8 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
9 Sobic.002G020100 chalcone synthase, putative, expressed -
10 Sobic.003G383600 - -
11 Sobic.002G306201 - -
12 Sobic.006G172700 LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
14 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
15 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
17 Sobic.009G059100 Cupin domain containing protein, expressed -
18 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
19 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
20 Sobic.010G219500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase


Gene co-expression network
sample Sobic009G098100 Sobic009G098100 Sobic001G069500 Sobic001G069500 Sobic009G098100--Sobic001G069500 Sobic003G295800 Sobic003G295800 Sobic009G098100--Sobic003G295800 Sobic001G188600 Sobic001G188600 Sobic009G098100--Sobic001G188600 Sobic001G453300 Sobic001G453300 Sobic009G098100--Sobic001G453300 Sobic001G383900 Sobic001G383900 Sobic009G098100--Sobic001G383900 Sobic001G027600 Sobic001G027600 Sobic009G098100--Sobic001G027600 Sobic008G030000 Sobic008G030000 Sobic009G098100--Sobic008G030000 Sobic004G076000 Sobic004G076000 Sobic009G098100--Sobic004G076000 Sobic002G020100 Sobic002G020100 Sobic009G098100--Sobic002G020100 Sobic001G069500--Sobic009G098100 Sobic001G069500--Sobic001G188600 Sobic007G211100 Sobic007G211100 Sobic001G069500--Sobic007G211100 Sobic001G069500--Sobic003G295800 Sobic003G383600 Sobic003G383600 Sobic001G069500--Sobic003G383600 Sobic008G123600 Sobic008G123600 Sobic001G069500--Sobic008G123600 Sobic009G001500 Sobic009G001500 Sobic001G069500--Sobic009G001500 Sobic001G069500--Sobic008G030000 Sobic007G013400 Sobic007G013400 Sobic001G069500--Sobic007G013400 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic003G295800--Sobic001G027600 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500 Sobic001G188600--Sobic001G069500 Sobic006G114300 Sobic006G114300 Sobic001G188600--Sobic006G114300 Sobic001G357200 Sobic001G357200 Sobic001G188600--Sobic001G357200 Sobic001G188600--Sobic009G098100 Sobic010G012900 Sobic010G012900 Sobic001G188600--Sobic010G012900 Sobic004G109000 Sobic004G109000 Sobic001G188600--Sobic004G109000 Sobic001G188600--Sobic007G211100 Sobic004G253800 Sobic004G253800 Sobic001G188600--Sobic004G253800 Sobic001G188600--Sobic008G030000 Sobic001G453300--Sobic001G027600 Sobic001G427000 Sobic001G427000 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic003G256200 Sobic003G256200 Sobic001G453300--Sobic003G256200 Sobic001G076500 Sobic001G076500 Sobic001G453300--Sobic001G076500 Sobic010G233800 Sobic010G233800 Sobic001G453300--Sobic010G233800 Sobic003G246400 Sobic003G246400 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G391400 Sobic001G391400 Sobic001G453300--Sobic001G391400 Sobic001G383900--Sobic001G453300 Sobic001G383900--Sobic001G027600 Sobic001G383900--Sobic001G076500 Sobic004G044000 Sobic004G044000 Sobic001G383900--Sobic004G044000 Sobic001G383900--Sobic009G098100 Sobic001G383900--Sobic003G132600 Sobic001G383900--Sobic001G427000 Sobic001G383900--Sobic001G391400 Sobic001G383900--Sobic009G001500 Sobic001G027600--Sobic001G453300 Sobic001G027600--Sobic001G427000 Sobic001G027600--Sobic001G076500 Sobic001G027600--Sobic004G044000 Sobic001G027600--Sobic004G317900 Sobic001G027600--Sobic001G383900 Sobic001G027600--Sobic003G295800 Sobic004G191200 Sobic004G191200 Sobic001G027600--Sobic004G191200 Sobic006G280050 Sobic006G280050 Sobic001G027600--Sobic006G280050 Sobic008G030000--Sobic003G295800 Sobic008G030000--Sobic009G098100 Sobic008G030000--Sobic009G001500 Sobic008G030000--Sobic003G383600 Sobic008G030000--Sobic001G453300 Sobic008G030000--Sobic001G357200 Sobic007G185100 Sobic007G185100 Sobic008G030000--Sobic007G185100 Sobic008G030000--Sobic001G383900 Sobic008G030000--Sobic007G013400 Sobic001G323801 Sobic001G323801 Sobic004G076000--Sobic001G323801 Sobic009G115050 Sobic009G115050 Sobic004G076000--Sobic009G115050 Sobic001G003600 Sobic001G003600 Sobic004G076000--Sobic001G003600 Sobic004G076000--Sobic008G123600 Sobic004G076000--Sobic001G017000 Sobic004G076000--Sobic002G020100 Sobic005G110436 Sobic005G110436 Sobic004G076000--Sobic005G110436 Sobic006G172700 Sobic006G172700 Sobic004G076000--Sobic006G172700 Sobic004G076000--Sobic003G295800 Sobic002G020100--Sobic001G003600 Sobic002G020100--Sobic006G172700 Sobic005G056201 Sobic005G056201 Sobic002G020100--Sobic005G056201 Sobic002G020100--Sobic004G076000 Sobic002G020100--Sobic009G115050 Sobic009G059100 Sobic009G059100 Sobic002G020100--Sobic009G059100 Sobic002G329500 Sobic002G329500 Sobic002G020100--Sobic002G329500 Sobic002G020100--Sobic009G098100 Sobic001G435600 Sobic001G435600 Sobic002G020100--Sobic001G435600
Octagon: transcription factors


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