Gene annotation
Transcriptome id Sobic.008G030000.2
Synonym Sb08g002610
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
elongation factor P, putative, expressed
UniProt A0A1Z5R4G6
Pfam PF01132 PF09285 PF08207
Panther DB PTHR30053 PTHR30053:SF3
NCBI CDD -
KEGG Orthology K02356; elongation factor P
Gene Ontology GO:0006414; translational elongation GO:0003746translation elongation factor activity GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT3G08740 : elongation factor P (EF-P) family protein
RAP-DB (Rice) LOC_Os12g02380.1 : elongation factor P, putative, expressed
MaizeGDB (Corn) Zm00025a053811
Brachypodium PNT64190
Barley HORVU4Hr1G022930.10 , HORVU4Hr1G022930.11 , HORVU4Hr1G022930.8 , HORVU4Hr1G022930.9 , HORVU4Hr1G022930.2 , HORVU4Hr1G022930.3 , HORVU4Hr1G022930.6 , HORVU4Hr1G022930.7 , HORVU4Hr1G022930.4 , HORVU4Hr1G022930.5
Wheat TraesCS4A02G194100 , TraesCS4A02G194100 , TraesCS4D02G119200 , TraesCS4D02G119200 , TraesCS4B02G121200
Populus -


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cDNA sequences
Sobic.008G030000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
2 Sobic.009G098100 T-complex protein, putative, expressed -
3 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
4 Sobic.003G383600 - -
5 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
6 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
7 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
8 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
10 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
11 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
12 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
13 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
14 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
15 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
16 Sobic.002G415300 - -
17 Sobic.002G415400 - -
18 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
19 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
20 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase


Gene co-expression network
sample Sobic008G030000 Sobic008G030000 Sobic003G295800 Sobic003G295800 Sobic008G030000--Sobic003G295800 Sobic009G098100 Sobic009G098100 Sobic008G030000--Sobic009G098100 Sobic009G001500 Sobic009G001500 Sobic008G030000--Sobic009G001500 Sobic003G383600 Sobic003G383600 Sobic008G030000--Sobic003G383600 Sobic001G453300 Sobic001G453300 Sobic008G030000--Sobic001G453300 Sobic001G357200 Sobic001G357200 Sobic008G030000--Sobic001G357200 Sobic007G185100 Sobic007G185100 Sobic008G030000--Sobic007G185100 Sobic001G383900 Sobic001G383900 Sobic008G030000--Sobic001G383900 Sobic007G013400 Sobic007G013400 Sobic008G030000--Sobic007G013400 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500 Sobic001G069500 Sobic001G069500 Sobic009G098100--Sobic001G069500 Sobic009G098100--Sobic003G295800 Sobic001G188600 Sobic001G188600 Sobic009G098100--Sobic001G188600 Sobic009G098100--Sobic001G453300 Sobic009G098100--Sobic001G383900 Sobic009G098100--Sobic001G027600 Sobic009G098100--Sobic008G030000 Sobic004G076000 Sobic004G076000 Sobic009G098100--Sobic004G076000 Sobic002G020100 Sobic002G020100 Sobic009G098100--Sobic002G020100 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic004G044000 Sobic004G044000 Sobic009G001500--Sobic004G044000 Sobic009G001500--Sobic003G383600 Sobic007G211100 Sobic007G211100 Sobic009G001500--Sobic007G211100 Sobic009G001500--Sobic008G030000 Sobic009G001500--Sobic001G383900 Sobic003G383600--Sobic003G295800 Sobic003G383600--Sobic007G013400 Sobic008G123600 Sobic008G123600 Sobic003G383600--Sobic008G123600 Sobic003G383600--Sobic001G069500 Sobic003G383600--Sobic009G001500 Sobic003G383600--Sobic008G030000 Sobic003G383600--Sobic009G098100 Sobic010G215500 Sobic010G215500 Sobic003G383600--Sobic010G215500 Sobic003G383600--Sobic003G383500 Sobic001G453300--Sobic001G027600 Sobic001G427000 Sobic001G427000 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic003G256200 Sobic003G256200 Sobic001G453300--Sobic003G256200 Sobic001G076500 Sobic001G076500 Sobic001G453300--Sobic001G076500 Sobic010G233800 Sobic010G233800 Sobic001G453300--Sobic010G233800 Sobic003G246400 Sobic003G246400 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G391400 Sobic001G391400 Sobic001G453300--Sobic001G391400 Sobic001G357200--Sobic001G188600 Sobic006G114300 Sobic006G114300 Sobic001G357200--Sobic006G114300 Sobic010G012900 Sobic010G012900 Sobic001G357200--Sobic010G012900 Sobic001G357200--Sobic009G001500 Sobic001G357200--Sobic008G030000 Sobic007G034500 Sobic007G034500 Sobic001G357200--Sobic007G034500 Sobic001G357200--Sobic008G123600 Sobic001G357200--Sobic001G069500 Sobic001G357200--Sobic003G383500 Sobic007G185100--Sobic004G317900 Sobic010G255600 Sobic010G255600 Sobic007G185100--Sobic010G255600 Sobic007G185100--Sobic010G233800 Sobic007G185100--Sobic010G215500 Sobic007G185100--Sobic003G295800 Sobic007G170800 Sobic007G170800 Sobic007G185100--Sobic007G170800 Sobic003G328200 Sobic003G328200 Sobic007G185100--Sobic003G328200 Sobic007G185100--Sobic008G030000 Sobic007G185100--Sobic004G076000 Sobic001G383900--Sobic001G453300 Sobic001G383900--Sobic001G027600 Sobic001G383900--Sobic001G076500 Sobic001G383900--Sobic004G044000 Sobic001G383900--Sobic009G098100 Sobic001G383900--Sobic003G132600 Sobic001G383900--Sobic001G427000 Sobic001G383900--Sobic001G391400 Sobic001G383900--Sobic009G001500 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic007G013400--Sobic003G383600 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100
Octagon: transcription factors


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