Sequence and annotation data
Annotation data
Downloads fpkm data
Downloads cDNA sequence data
Published RNA-Seq data
You can download DNA, cDNA, protein and ncRNA sequence datas from "Ensemble Genomes 46" or "JGI v3.1.1".
Annotation data
| Full-length cDNA | Sorghum_cDNA.fasta.gz |
|---|---|
| rRNA | Sorghum_rRNA.fa |
Downloads fpkm data
Downloads cDNA sequence data
Published RNA-Seq data
| Referance | Difinition | Platform | Sample name | NCBI link |
|---|---|---|---|---|
| Dugas DV, et al. BMC Genomics. 2011 |
RNA-Seq of Sorghum bicolor 9d seedlings in response to osmotic stress and abscisic acid. | Illumina Genome Analyzer IIx | ABA Root PEG Root Control Root NaOH Root ABA Shoot PEG Shoot Control Shoot NaOH Shoot |
SRP007361(NCBI) |
| Davidson RM, et al. Plant Journal. 2012 |
Sorghum bicolor, BTx623 RNA-Seq - Conserved Poaceae Specific Genes Project. | Illumina Genome Analyzer IIx | 20 Day Leaves (SBB_AA) Emerging Inflorescence Seed 5 Days After Pollination Early Inflorescence Pistil Embryo 25 Days After Pollination Endosperm 25 Days After Pollination Anther Seed 10 Days After Pollination 20 Day Leaves (SBB_CA) |
SRP008469(NCBI) |
| Mizuno H, et al. BMC Plant Biol. 2012 |
mRNA-seq for Sorghum bicolor (L.) Moench BTx623 infected by Bipolaris sorghicola. | Illumina Genome Analyzer IIx | Mock Infected by Bipolaris sorghicola |
DRA000387(NCBI) |
| Yazawa T, et al. PLoS One. 2013 |
Simultaneous transcriptome analysis of sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome. | Illumina HiSeq 2000 | Control 0h Control 12h Infected 12h Control 24h Infected 24h |
DRA000948(NCBI) |
| Gelli M, et al. BMC Genomics. 2014 |
Sorghum nitrogen stress tolerance. | Illumina Genome Analyzer IIx | CK60 BTX623 San chi San China17 KS78 high-NUE bulk low-NUE bulk |
SRP036640(NCBI) |
| Mizuno H, et al. BMC Res Notes. 2014 Mizuno H, et al. Front Plant Sci. 2016 |
Color variation in sorghum is controlled by the expression level of the F3'H gene. | Illumina Genome Analyzer II | Control(Nakei, M36001 #3, #62, #96, #127) Cut-stress(Nakei, M36001 #3, #62, #96, #127) |
DRA001265(NCBI) |
| Shimada S, et al. DNA Res. 2015 Makita Y, et al. Plant Cell Physiol. 2015 |
Tissue specific expression data in Sorghum bicolor BTx623. | Illumina HiSeq 2000 | Seed Stem Panicle |
DRR030757(NCBI) DRA003104(NCBI) |
| Mizino H, et al. BMC Plant Biol. 2018 |
Sugar RNA-seq. | Illumina HiSeq 2000 | Intact Lodged |
DRA001269(NCBI) |
| McCormick RF, et al. Plant J. 2018 |
Gene expression analysis of Sorghum bicolor BTx623. | Illumina Hiseq 2500 | Internode(g upper, growing, mature) Leaf(blade, flag internode, sheath growing, lower, lower growing, lower whorl, upper, upper growing, upper whorl) Panicle(control, lower, upper) Peduncle Root(control, bottom, middle, top) Seed(dry, imbibed) Shoots Stem(1cm, 2mm, mid internode) |
SRA558272(NCBI) SRA558514(NCBI) SRA558539(NCBI) |
| Lu Z, et al. Nat Plants. 2019 |
The prevalence, evolution and chromatin signatures of plant regulatory elements. | Illumina NextSeq 500 | ATAC-seq Leaf ChIP-seq : H3 ChIP-seq : H3K27me3 ChIP-seq : H3K36me3 ChIP-seq : H3K56ac ChIP-seq : H3K4me3 ChIP-seq : H3K4me1 ChIP-seq : H2A.Z RNA-seq |
SRP188687(NCBI) |
