Gene annotation
Transcriptome id Sobic.005G110481.1
Synonym -
Functional annotation -
UniProt C6JRK7 , A0A109NDV7 , A0A1Z5RIF0 , C6JRK5
Pfam PF04542 PF04545 PF04539
Panther DB PTHR30603 PTHR30603:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016987; sigma factor activity GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G08540 : RNApolymerase sigma subunit 2
RAP-DB (Rice) LOC_Os11g26160.1 : RNA polymerase sigma factor, putative, expressed
MaizeGDB (Corn) Zm00025a029711
Brachypodium KQK22364 , KQK22365 , KQJ88557
Barley HORVU4Hr1G060200.8 , HORVU4Hr1G060200.9 , HORVU4Hr1G060200.6 , HORVU4Hr1G060200.4 , HORVU4Hr1G060200.5 , HORVU4Hr1G060200.2 , HORVU4Hr1G060200.3 , HORVU4Hr1G060200.1 , HORVU4Hr1G044910.2 , HORVU4Hr1G044910.3 , HORVU4Hr1G044910.4 , HORVU4Hr1G044910.5 , HORVU4Hr1G044910.7 , HORVU4Hr1G044910.6 , HORVU4Hr1G044910.8 , HORVU4Hr1G044910.9 , HORVU4Hr1G060200.10 , HORVU4Hr1G045100.1 , HORVU4Hr1G044910.12 , HORVU4Hr1G044910.13 , HORVU4Hr1G044910.10 , HORVU4Hr1G044910.11 , HORVU4Hr1G044910.14
Wheat TraesCS4B02G163500 , TraesCS4A02G095200 , TraesCS4D02G154500 , TraesCS4D02G154500 , TraesCS4D02G154500 , TraesCS4A02G157100 , TraesCS4A02G157100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
2 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
3 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
4 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -
5 Sobic.007G101300 expressed protein -
6 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
7 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
8 Sobic.002G013700 PPR2, putative, expressed -
9 Sobic.002G251400 expressed protein -
10 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
11 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
12 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
13 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
14 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
15 Sobic.003G383500 rhodanese-like, putative, expressed -
16 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
17 Sobic.003G292300 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
18 Sobic.003G324700 expressed protein -
19 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
20 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17


Gene co-expression network
sample Sobic005G110481 Sobic005G110481 Sobic010G011200 Sobic010G011200 Sobic005G110481--Sobic010G011200 Sobic001G148200 Sobic001G148200 Sobic005G110481--Sobic001G148200 Sobic007G171800 Sobic007G171800 Sobic005G110481--Sobic007G171800 Sobic009G042200 Sobic009G042200 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic009G104700 Sobic009G104700 Sobic005G110481--Sobic009G104700 Sobic007G013400 Sobic007G013400 Sobic005G110481--Sobic007G013400 Sobic002G013700 Sobic002G013700 Sobic005G110481--Sobic002G013700 Sobic002G251400 Sobic002G251400 Sobic005G110481--Sobic002G251400 Sobic010G011200--Sobic005G110481 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic010G011200--Sobic001G148200 Sobic010G011200--Sobic002G013700 Sobic009G001500 Sobic009G001500 Sobic010G011200--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic010G011200--Sobic001G383900 Sobic010G011200--Sobic009G104700 Sobic009G098100 Sobic009G098100 Sobic010G011200--Sobic009G098100 Sobic001G148200--Sobic005G110481 Sobic003G444500 Sobic003G444500 Sobic001G148200--Sobic003G444500 Sobic001G148200--Sobic009G042200 Sobic001G148200--Sobic007G171800 Sobic001G148200--Sobic002G251400 Sobic001G148200--Sobic010G011200 Sobic001G148200--Sobic002G013700 Sobic007G034500 Sobic007G034500 Sobic001G148200--Sobic007G034500 Sobic001G148200--Sobic009G001500 Sobic007G171800--Sobic010G011200 Sobic007G171800--Sobic005G110481 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic007G171800--Sobic009G042200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic009G042200--Sobic005G110481 Sobic009G042200--Sobic007G171800 Sobic009G042200--Sobic001G148200 Sobic007G155600 Sobic007G155600 Sobic009G042200--Sobic007G155600 Sobic001G391400 Sobic001G391400 Sobic009G042200--Sobic001G391400 Sobic009G042200--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic009G042200--Sobic004G335800 Sobic009G042200--Sobic003G444500 Sobic002G297400 Sobic002G297400 Sobic009G042200--Sobic002G297400 Sobic005G184300 Sobic005G184300 Sobic007G101300--Sobic005G184300 Sobic007G101300--Sobic005G110481 Sobic003G128400 Sobic003G128400 Sobic007G101300--Sobic003G128400 Sobic007G101300--Sobic002G013700 Sobic007G101300--Sobic009G104700 Sobic001G375000 Sobic001G375000 Sobic007G101300--Sobic001G375000 Sobic001G281500 Sobic001G281500 Sobic007G101300--Sobic001G281500 Sobic001G099000 Sobic001G099000 Sobic007G101300--Sobic001G099000 Sobic010G027200 Sobic010G027200 Sobic007G101300--Sobic010G027200 Sobic009G104700--Sobic005G110481 Sobic002G158800 Sobic002G158800 Sobic009G104700--Sobic002G158800 Sobic009G104700--Sobic007G101300 Sobic009G104700--Sobic010G011200 Sobic009G104700--Sobic002G013700 Sobic009G104700--Sobic005G184300 Sobic009G104700--Sobic003G444500 Sobic009G104700--Sobic003G128400 Sobic003G373300 Sobic003G373300 Sobic009G104700--Sobic003G373300 Sobic003G383500 Sobic003G383500 Sobic007G013400--Sobic003G383500 Sobic003G295800 Sobic003G295800 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic007G013400--Sobic002G251400 Sobic003G383600 Sobic003G383600 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G211100 Sobic007G211100 Sobic007G013400--Sobic007G211100 Sobic002G013700--Sobic005G110481 Sobic002G013700--Sobic007G171800 Sobic002G013700--Sobic010G011200 Sobic002G013700--Sobic007G101300 Sobic002G013700--Sobic002G251400 Sobic002G013700--Sobic009G104700 Sobic002G013700--Sobic002G158800 Sobic002G013700--Sobic001G148200 Sobic002G013700--Sobic009G042200 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic001G240000 Sobic001G240000 Sobic002G251400--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic002G251400--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic002G251400--Sobic001G122400 Sobic002G251400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic002G251400--Sobic001G527100 Sobic002G251400--Sobic007G013400 Sobic002G251400--Sobic003G295800
Octagon: transcription factors


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