Gene annotation
Transcriptome id Sobic.001G148200.1
Synonym Sb01g012890
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
antitermination NusB domain-containing protein, putative, expressed
UniProt Q8W0R1 , A0A1B6QJ04
Pfam PF01029
Panther DB PTHR11078
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006353; DNA-templated transcription, termination GO:0003723RNA binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT4G26370 : antitermination NusB domain-containing protein
RAP-DB (Rice) LOC_Os03g45400.1 : antitermination NusB domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007552 , Zm00025a017202
Brachypodium -
Barley -
Wheat TraesCS4B02G015600 , TraesCS4A02G298100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110481 - -
2 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
3 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -
4 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
5 Sobic.002G251400 expressed protein -
6 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
7 Sobic.002G013700 PPR2, putative, expressed -
8 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
9 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
10 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
11 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
12 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
13 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
14 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
15 Sobic.007G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
16 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
19 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
20 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -


Gene co-expression network
sample Sobic001G148200 Sobic001G148200 Sobic005G110481 Sobic005G110481 Sobic001G148200--Sobic005G110481 Sobic003G444500 Sobic003G444500 Sobic001G148200--Sobic003G444500 Sobic009G042200 Sobic009G042200 Sobic001G148200--Sobic009G042200 Sobic007G171800 Sobic007G171800 Sobic001G148200--Sobic007G171800 Sobic002G251400 Sobic002G251400 Sobic001G148200--Sobic002G251400 Sobic010G011200 Sobic010G011200 Sobic001G148200--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic001G148200--Sobic002G013700 Sobic007G034500 Sobic007G034500 Sobic001G148200--Sobic007G034500 Sobic009G001500 Sobic009G001500 Sobic001G148200--Sobic009G001500 Sobic005G110481--Sobic010G011200 Sobic005G110481--Sobic001G148200 Sobic005G110481--Sobic007G171800 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic009G104700 Sobic009G104700 Sobic005G110481--Sobic009G104700 Sobic007G013400 Sobic007G013400 Sobic005G110481--Sobic007G013400 Sobic005G110481--Sobic002G013700 Sobic005G110481--Sobic002G251400 Sobic003G444500--Sobic001G148200 Sobic003G330100 Sobic003G330100 Sobic003G444500--Sobic003G330100 Sobic004G179200 Sobic004G179200 Sobic003G444500--Sobic004G179200 Sobic003G444500--Sobic002G251400 Sobic003G444500--Sobic009G042200 Sobic003G221700 Sobic003G221700 Sobic003G444500--Sobic003G221700 Sobic003G084500 Sobic003G084500 Sobic003G444500--Sobic003G084500 Sobic002G131700 Sobic002G131700 Sobic003G444500--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G444500--Sobic004G250200 Sobic009G042200--Sobic005G110481 Sobic009G042200--Sobic007G171800 Sobic009G042200--Sobic001G148200 Sobic007G155600 Sobic007G155600 Sobic009G042200--Sobic007G155600 Sobic001G391400 Sobic001G391400 Sobic009G042200--Sobic001G391400 Sobic009G042200--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic009G042200--Sobic004G335800 Sobic009G042200--Sobic003G444500 Sobic002G297400 Sobic002G297400 Sobic009G042200--Sobic002G297400 Sobic007G171800--Sobic010G011200 Sobic007G171800--Sobic005G110481 Sobic007G171800--Sobic002G251400 Sobic007G171800--Sobic002G131700 Sobic007G171800--Sobic009G042200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic001G040000 Sobic001G040000 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic001G240000 Sobic001G240000 Sobic002G251400--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic002G251400--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic002G251400--Sobic001G122400 Sobic002G251400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic002G251400--Sobic001G527100 Sobic002G251400--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic002G251400--Sobic003G295800 Sobic010G011200--Sobic005G110481 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic010G011200--Sobic001G148200 Sobic010G011200--Sobic002G013700 Sobic010G011200--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic010G011200--Sobic001G383900 Sobic010G011200--Sobic009G104700 Sobic009G098100 Sobic009G098100 Sobic010G011200--Sobic009G098100 Sobic002G013700--Sobic005G110481 Sobic002G013700--Sobic007G171800 Sobic002G013700--Sobic010G011200 Sobic002G013700--Sobic007G101300 Sobic002G013700--Sobic002G251400 Sobic002G013700--Sobic009G104700 Sobic002G158800 Sobic002G158800 Sobic002G013700--Sobic002G158800 Sobic002G013700--Sobic001G148200 Sobic002G013700--Sobic009G042200 Sobic007G034500--Sobic007G171800 Sobic004G044000 Sobic004G044000 Sobic007G034500--Sobic004G044000 Sobic006G280050 Sobic006G280050 Sobic007G034500--Sobic006G280050 Sobic004G191200 Sobic004G191200 Sobic007G034500--Sobic004G191200 Sobic001G357200 Sobic001G357200 Sobic007G034500--Sobic001G357200 Sobic007G034500--Sobic009G001500 Sobic007G034500--Sobic001G383900 Sobic001G191000 Sobic001G191000 Sobic007G034500--Sobic001G191000 Sobic001G027600 Sobic001G027600 Sobic007G034500--Sobic001G027600 Sobic009G001500--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic009G001500--Sobic004G044000 Sobic003G383600 Sobic003G383600 Sobic009G001500--Sobic003G383600 Sobic007G211100 Sobic007G211100 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic009G001500--Sobic001G383900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.