Gene annotation
Transcriptome id Sobic.002G013700.1
Synonym EMB2750, Sb02g001400
Functional annotation PPR2, putative, expressed
UniProt C5X7Y1
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF301
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G06430 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g19650.3 : PPR2, putative, expressed
MaizeGDB (Corn) Zm00025a044917
Brachypodium -
Barley -
Wheat TraesCS4B02G138200 , TraesCS4A02G178100 , TraesCS4A02G178100 , TraesCS4D02G132900 , TraesCS4D02G132900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110481 - -
2 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
3 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
4 Sobic.007G101300 expressed protein -
5 Sobic.002G251400 expressed protein -
6 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
7 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
8 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
9 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -
10 Sobic.001G099000 expressed protein -
11 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
13 Sobic.003G373300 DNA polymerase I, putative, expressed -
14 Sobic.007G015300 calreticulin family protein, expressed -
15 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
16 Sobic.004G255500 SET domain-containing protein, putative, expressed -
17 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
18 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
19 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
20 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor


Gene co-expression network
sample Sobic002G013700 Sobic002G013700 Sobic005G110481 Sobic005G110481 Sobic002G013700--Sobic005G110481 Sobic007G171800 Sobic007G171800 Sobic002G013700--Sobic007G171800 Sobic010G011200 Sobic010G011200 Sobic002G013700--Sobic010G011200 Sobic007G101300 Sobic007G101300 Sobic002G013700--Sobic007G101300 Sobic002G251400 Sobic002G251400 Sobic002G013700--Sobic002G251400 Sobic009G104700 Sobic009G104700 Sobic002G013700--Sobic009G104700 Sobic002G158800 Sobic002G158800 Sobic002G013700--Sobic002G158800 Sobic001G148200 Sobic001G148200 Sobic002G013700--Sobic001G148200 Sobic009G042200 Sobic009G042200 Sobic002G013700--Sobic009G042200 Sobic005G110481--Sobic010G011200 Sobic005G110481--Sobic001G148200 Sobic005G110481--Sobic007G171800 Sobic005G110481--Sobic009G042200 Sobic005G110481--Sobic007G101300 Sobic005G110481--Sobic009G104700 Sobic007G013400 Sobic007G013400 Sobic005G110481--Sobic007G013400 Sobic005G110481--Sobic002G013700 Sobic005G110481--Sobic002G251400 Sobic007G171800--Sobic010G011200 Sobic007G171800--Sobic005G110481 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic007G171800--Sobic009G042200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic010G011200--Sobic005G110481 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic010G011200--Sobic001G148200 Sobic010G011200--Sobic002G013700 Sobic009G001500 Sobic009G001500 Sobic010G011200--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic010G011200--Sobic001G383900 Sobic010G011200--Sobic009G104700 Sobic009G098100 Sobic009G098100 Sobic010G011200--Sobic009G098100 Sobic005G184300 Sobic005G184300 Sobic007G101300--Sobic005G184300 Sobic007G101300--Sobic005G110481 Sobic003G128400 Sobic003G128400 Sobic007G101300--Sobic003G128400 Sobic007G101300--Sobic002G013700 Sobic007G101300--Sobic009G104700 Sobic001G375000 Sobic001G375000 Sobic007G101300--Sobic001G375000 Sobic001G281500 Sobic001G281500 Sobic007G101300--Sobic001G281500 Sobic001G099000 Sobic001G099000 Sobic007G101300--Sobic001G099000 Sobic010G027200 Sobic010G027200 Sobic007G101300--Sobic010G027200 Sobic001G040000 Sobic001G040000 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic001G240000 Sobic001G240000 Sobic002G251400--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic002G251400--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic002G251400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic002G251400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic002G251400--Sobic001G527100 Sobic002G251400--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic002G251400--Sobic003G295800 Sobic009G104700--Sobic005G110481 Sobic009G104700--Sobic002G158800 Sobic009G104700--Sobic007G101300 Sobic009G104700--Sobic010G011200 Sobic009G104700--Sobic002G013700 Sobic009G104700--Sobic005G184300 Sobic003G444500 Sobic003G444500 Sobic009G104700--Sobic003G444500 Sobic009G104700--Sobic003G128400 Sobic003G373300 Sobic003G373300 Sobic009G104700--Sobic003G373300 Sobic002G158800--Sobic001G099000 Sobic001G391400 Sobic001G391400 Sobic002G158800--Sobic001G391400 Sobic002G158800--Sobic003G324700 Sobic007G015300 Sobic007G015300 Sobic002G158800--Sobic007G015300 Sobic002G158800--Sobic005G110481 Sobic002G158800--Sobic001G122400 Sobic004G338300 Sobic004G338300 Sobic002G158800--Sobic004G338300 Sobic002G158800--Sobic005G184300 Sobic002G158800--Sobic009G104700 Sobic001G148200--Sobic005G110481 Sobic001G148200--Sobic003G444500 Sobic001G148200--Sobic009G042200 Sobic001G148200--Sobic007G171800 Sobic001G148200--Sobic002G251400 Sobic001G148200--Sobic010G011200 Sobic001G148200--Sobic002G013700 Sobic001G148200--Sobic007G034500 Sobic001G148200--Sobic009G001500 Sobic009G042200--Sobic005G110481 Sobic009G042200--Sobic007G171800 Sobic009G042200--Sobic001G148200 Sobic007G155600 Sobic007G155600 Sobic009G042200--Sobic007G155600 Sobic009G042200--Sobic001G391400 Sobic009G042200--Sobic002G251400 Sobic009G042200--Sobic004G335800 Sobic009G042200--Sobic003G444500 Sobic002G297400 Sobic002G297400 Sobic009G042200--Sobic002G297400
Octagon: transcription factors


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