Gene annotation
Transcriptome id Sobic.010G012900.1
Synonym Sb10g001280, FSD2
Functional annotation superoxide dismutase, chloroplast, putative, expressed
UniProt H2DLY8 , A0A194YHS4
Pfam PF00081 PF02777
Panther DB PTHR11404 PTHR11404:SF8
NCBI CDD KOG0876; Manganese superoxide dismutase
KEGG Orthology K04564; superoxide dismutase, Fe-Mn family
Gene Ontology GO:0006801; superoxide metabolic process GO:0004784superoxide dismutase activity


Orthologs (automatic annotation)
TAIR AT5G51100 : Fe superoxide dismutase 2
RAP-DB (Rice) LOC_Os06g02500.1 : superoxide dismutase, chloroplast, putative, expressed
MaizeGDB (Corn) Zm00025a050253
Brachypodium PNT76621
Barley HORVU7Hr1G008390.1 , HORVU7Hr1G008390.5 , HORVU7Hr1G008390.4 , HORVU7Hr1G008390.7 , HORVU7Hr1G008390.6 , HORVU7Hr1G008390.9 , HORVU7Hr1G008390.8 , HORVU7Hr1G008390.15 , HORVU7Hr1G008390.14 , HORVU7Hr1G008390.11 , HORVU7Hr1G008390.10 , HORVU7Hr1G008390.13 , HORVU7Hr1G008390.12
Wheat TraesCS4A02G434000 , TraesCS7D02G043000 , TraesCS7A02G048600
Populus PNT01601 , PNT01600


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
2 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
3 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
4 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
6 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
7 Sobic.003G383500 rhodanese-like, putative, expressed -
8 Sobic.006G114300 pentatricopeptide, putative, expressed -
9 Sobic.009G098100 T-complex protein, putative, expressed -
10 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
11 Sobic.002G190800 expressed protein -
12 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
13 Sobic.005G110481 - -
14 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
15 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
16 Sobic.003G383600 - -
17 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
18 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
19 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
20 Sobic.004G253800 - -


Gene co-expression network
sample Sobic010G012900 Sobic010G012900 Sobic001G188600 Sobic001G188600 Sobic010G012900--Sobic001G188600 Sobic001G357200 Sobic001G357200 Sobic010G012900--Sobic001G357200 Sobic010G011200 Sobic010G011200 Sobic010G012900--Sobic010G011200 Sobic001G383900 Sobic001G383900 Sobic010G012900--Sobic001G383900 Sobic001G172300 Sobic001G172300 Sobic010G012900--Sobic001G172300 Sobic007G034500 Sobic007G034500 Sobic010G012900--Sobic007G034500 Sobic003G383500 Sobic003G383500 Sobic010G012900--Sobic003G383500 Sobic006G114300 Sobic006G114300 Sobic010G012900--Sobic006G114300 Sobic009G098100 Sobic009G098100 Sobic010G012900--Sobic009G098100 Sobic001G069500 Sobic001G069500 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G188600--Sobic001G357200 Sobic001G188600--Sobic009G098100 Sobic001G188600--Sobic010G012900 Sobic004G109000 Sobic004G109000 Sobic001G188600--Sobic004G109000 Sobic007G211100 Sobic007G211100 Sobic001G188600--Sobic007G211100 Sobic004G253800 Sobic004G253800 Sobic001G188600--Sobic004G253800 Sobic008G030000 Sobic008G030000 Sobic001G188600--Sobic008G030000 Sobic001G357200--Sobic001G188600 Sobic001G357200--Sobic006G114300 Sobic001G357200--Sobic010G012900 Sobic009G001500 Sobic009G001500 Sobic001G357200--Sobic009G001500 Sobic001G357200--Sobic008G030000 Sobic001G357200--Sobic007G034500 Sobic008G123600 Sobic008G123600 Sobic001G357200--Sobic008G123600 Sobic001G357200--Sobic001G069500 Sobic001G357200--Sobic003G383500 Sobic005G110481 Sobic005G110481 Sobic010G011200--Sobic005G110481 Sobic007G171800 Sobic007G171800 Sobic010G011200--Sobic007G171800 Sobic010G011200--Sobic010G012900 Sobic001G148200 Sobic001G148200 Sobic010G011200--Sobic001G148200 Sobic002G013700 Sobic002G013700 Sobic010G011200--Sobic002G013700 Sobic010G011200--Sobic009G001500 Sobic010G011200--Sobic001G383900 Sobic009G104700 Sobic009G104700 Sobic010G011200--Sobic009G104700 Sobic010G011200--Sobic009G098100 Sobic001G453300 Sobic001G453300 Sobic001G383900--Sobic001G453300 Sobic001G027600 Sobic001G027600 Sobic001G383900--Sobic001G027600 Sobic001G076500 Sobic001G076500 Sobic001G383900--Sobic001G076500 Sobic004G044000 Sobic004G044000 Sobic001G383900--Sobic004G044000 Sobic001G383900--Sobic009G098100 Sobic003G132600 Sobic003G132600 Sobic001G383900--Sobic003G132600 Sobic001G427000 Sobic001G427000 Sobic001G383900--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic001G383900--Sobic001G391400 Sobic001G383900--Sobic009G001500 Sobic001G172300--Sobic010G012900 Sobic001G347800 Sobic001G347800 Sobic001G172300--Sobic001G347800 Sobic003G392000 Sobic003G392000 Sobic001G172300--Sobic003G392000 Sobic001G172300--Sobic001G188600 Sobic002G190800 Sobic002G190800 Sobic001G172300--Sobic002G190800 Sobic001G172300--Sobic006G114300 Sobic002G360200 Sobic002G360200 Sobic001G172300--Sobic002G360200 Sobic001G172300--Sobic001G357200 Sobic001G172300--Sobic004G253800 Sobic007G034500--Sobic007G171800 Sobic007G034500--Sobic004G044000 Sobic006G280050 Sobic006G280050 Sobic007G034500--Sobic006G280050 Sobic004G191200 Sobic004G191200 Sobic007G034500--Sobic004G191200 Sobic007G034500--Sobic001G357200 Sobic007G034500--Sobic009G001500 Sobic007G034500--Sobic001G383900 Sobic001G191000 Sobic001G191000 Sobic007G034500--Sobic001G191000 Sobic007G034500--Sobic001G027600 Sobic007G013400 Sobic007G013400 Sobic003G383500--Sobic007G013400 Sobic003G383500--Sobic009G001500 Sobic003G295800 Sobic003G295800 Sobic003G383500--Sobic003G295800 Sobic003G383500--Sobic007G211100 Sobic003G261200 Sobic003G261200 Sobic003G383500--Sobic003G261200 Sobic003G383500--Sobic004G044000 Sobic003G383600 Sobic003G383600 Sobic003G383500--Sobic003G383600 Sobic003G383500--Sobic005G110481 Sobic003G383500--Sobic004G109000 Sobic006G114300--Sobic001G188600 Sobic006G114300--Sobic001G357200 Sobic006G114300--Sobic004G109000 Sobic006G114300--Sobic001G069500 Sobic006G114300--Sobic010G012900 Sobic006G114300--Sobic003G383500 Sobic006G114300--Sobic004G253800 Sobic006G114300--Sobic007G211100 Sobic006G114300--Sobic007G013400 Sobic009G098100--Sobic001G069500 Sobic009G098100--Sobic003G295800 Sobic009G098100--Sobic001G188600 Sobic009G098100--Sobic001G453300 Sobic009G098100--Sobic001G383900 Sobic009G098100--Sobic001G027600 Sobic009G098100--Sobic008G030000 Sobic004G076000 Sobic004G076000 Sobic009G098100--Sobic004G076000 Sobic002G020100 Sobic002G020100 Sobic009G098100--Sobic002G020100
Octagon: transcription factors


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