Gene annotation
Transcriptome id Sobic.004G044000.1
Synonym Sb04g003770
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
EMB1303, putative, expressed
UniProt C5XUR8
Pfam -
Panther DB PTHR34938
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G30475 : -
RAP-DB (Rice) LOC_Os02g05890.1 : EMB1303, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS6B02G152000 , TraesCS6A02G123900
Populus -


JBrowse

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cDNA sequences
Sobic.004G044000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
2 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
4 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
5 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
7 Sobic.002G242600 expressed protein -
8 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
9 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
10 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
11 Sobic.003G383500 rhodanese-like, putative, expressed -
12 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
13 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
14 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
15 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
16 Sobic.002G190800 expressed protein -
17 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
18 Sobic.004G317900 expressed protein -
19 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
20 Sobic.004G253800 - -


Gene co-expression network
sample Sobic004G044000 Sobic004G044000 Sobic001G027600 Sobic001G027600 Sobic004G044000--Sobic001G027600 Sobic001G383900 Sobic001G383900 Sobic004G044000--Sobic001G383900 Sobic006G280050 Sobic006G280050 Sobic004G044000--Sobic006G280050 Sobic009G001500 Sobic009G001500 Sobic004G044000--Sobic009G001500 Sobic003G030900 Sobic003G030900 Sobic004G044000--Sobic003G030900 Sobic007G013400 Sobic007G013400 Sobic004G044000--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic004G044000--Sobic002G242600 Sobic001G076500 Sobic001G076500 Sobic004G044000--Sobic001G076500 Sobic007G034500 Sobic007G034500 Sobic004G044000--Sobic007G034500 Sobic001G453300 Sobic001G453300 Sobic001G027600--Sobic001G453300 Sobic001G427000 Sobic001G427000 Sobic001G027600--Sobic001G427000 Sobic001G027600--Sobic001G076500 Sobic001G027600--Sobic004G044000 Sobic004G317900 Sobic004G317900 Sobic001G027600--Sobic004G317900 Sobic001G027600--Sobic001G383900 Sobic003G295800 Sobic003G295800 Sobic001G027600--Sobic003G295800 Sobic004G191200 Sobic004G191200 Sobic001G027600--Sobic004G191200 Sobic001G027600--Sobic006G280050 Sobic001G383900--Sobic001G453300 Sobic001G383900--Sobic001G027600 Sobic001G383900--Sobic001G076500 Sobic001G383900--Sobic004G044000 Sobic009G098100 Sobic009G098100 Sobic001G383900--Sobic009G098100 Sobic003G132600 Sobic003G132600 Sobic001G383900--Sobic003G132600 Sobic001G383900--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic001G383900--Sobic001G391400 Sobic001G383900--Sobic009G001500 Sobic001G191000 Sobic001G191000 Sobic006G280050--Sobic001G191000 Sobic006G280050--Sobic001G027600 Sobic003G246400 Sobic003G246400 Sobic006G280050--Sobic003G246400 Sobic006G280050--Sobic004G044000 Sobic006G280050--Sobic004G191200 Sobic006G280050--Sobic004G317900 Sobic001G017000 Sobic001G017000 Sobic006G280050--Sobic001G017000 Sobic006G280050--Sobic001G076500 Sobic006G280050--Sobic001G453300 Sobic009G001500--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic009G001500--Sobic004G044000 Sobic003G383600 Sobic003G383600 Sobic009G001500--Sobic003G383600 Sobic007G211100 Sobic007G211100 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic009G001500--Sobic001G383900 Sobic003G030900--Sobic001G027600 Sobic003G030900--Sobic004G044000 Sobic006G248200 Sobic006G248200 Sobic003G030900--Sobic006G248200 Sobic001G040000 Sobic001G040000 Sobic003G030900--Sobic001G040000 Sobic001G240000 Sobic001G240000 Sobic003G030900--Sobic001G240000 Sobic003G030900--Sobic007G013400 Sobic003G030900--Sobic002G242600 Sobic003G030900--Sobic004G317900 Sobic001G531200 Sobic001G531200 Sobic003G030900--Sobic001G531200 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic007G013400--Sobic003G383600 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100 Sobic002G242600--Sobic004G044000 Sobic002G242600--Sobic007G013400 Sobic002G242600--Sobic003G030900 Sobic002G242600--Sobic003G383500 Sobic002G242600--Sobic009G001500 Sobic002G190100 Sobic002G190100 Sobic002G242600--Sobic002G190100 Sobic002G242600--Sobic001G027600 Sobic002G242600--Sobic001G475600 Sobic002G242600--Sobic006G248200 Sobic001G076500--Sobic001G427000 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic010G233800 Sobic010G233800 Sobic001G076500--Sobic010G233800 Sobic001G076500--Sobic001G383900 Sobic003G393800 Sobic003G393800 Sobic001G076500--Sobic003G393800 Sobic001G076500--Sobic003G132600 Sobic001G076500--Sobic004G044000 Sobic001G076500--Sobic003G246400 Sobic007G171800 Sobic007G171800 Sobic007G034500--Sobic007G171800 Sobic007G034500--Sobic004G044000 Sobic007G034500--Sobic006G280050 Sobic007G034500--Sobic004G191200 Sobic001G357200 Sobic001G357200 Sobic007G034500--Sobic001G357200 Sobic007G034500--Sobic009G001500 Sobic007G034500--Sobic001G383900 Sobic007G034500--Sobic001G191000 Sobic007G034500--Sobic001G027600
Octagon: transcription factors


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