Gene annotation
Transcriptome id Sobic.002G242600.1,Sobic.002G242600.2,Sobic.002G242600.3
Synonym Sb02g027960
Functional annotation expressed protein
UniProt A0A1W0W5S0 , A0A1W0W5I5 , C5X3T0
Pfam -
Panther DB PTHR36018
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33180 : -
RAP-DB (Rice) LOC_Os09g30410.2,LOC_Os09g30410.1 : expressed protein
MaizeGDB (Corn) Zm00025a014187
Brachypodium KQJ90705 , KQJ90706
Barley HORVU5Hr1G072120.1 , HORVU5Hr1G072120.2 , HORVU5Hr1G072120.5 , HORVU5Hr1G072120.4 , HORVU5Hr1G072120.7
Wheat TraesCS5D02G266400 , TraesCS5B02G257400 , TraesCS5A02G258200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
2 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
3 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G383500 rhodanese-like, putative, expressed -
5 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
6 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
8 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
9 Sobic.006G248200 - -
10 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
11 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
12 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
13 Sobic.004G317900 expressed protein -
14 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
15 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
16 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
17 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
18 Sobic.003G120500 transmembrane protein 136, putative, expressed -
19 Sobic.002G251400 expressed protein -
20 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5


Gene co-expression network
sample Sobic002G242600 Sobic002G242600 Sobic004G044000 Sobic004G044000 Sobic002G242600--Sobic004G044000 Sobic007G013400 Sobic007G013400 Sobic002G242600--Sobic007G013400 Sobic003G030900 Sobic003G030900 Sobic002G242600--Sobic003G030900 Sobic003G383500 Sobic003G383500 Sobic002G242600--Sobic003G383500 Sobic009G001500 Sobic009G001500 Sobic002G242600--Sobic009G001500 Sobic002G190100 Sobic002G190100 Sobic002G242600--Sobic002G190100 Sobic001G027600 Sobic001G027600 Sobic002G242600--Sobic001G027600 Sobic001G475600 Sobic001G475600 Sobic002G242600--Sobic001G475600 Sobic006G248200 Sobic006G248200 Sobic002G242600--Sobic006G248200 Sobic004G044000--Sobic001G027600 Sobic001G383900 Sobic001G383900 Sobic004G044000--Sobic001G383900 Sobic006G280050 Sobic006G280050 Sobic004G044000--Sobic006G280050 Sobic004G044000--Sobic009G001500 Sobic004G044000--Sobic003G030900 Sobic004G044000--Sobic007G013400 Sobic004G044000--Sobic002G242600 Sobic001G076500 Sobic001G076500 Sobic004G044000--Sobic001G076500 Sobic007G034500 Sobic007G034500 Sobic004G044000--Sobic007G034500 Sobic007G013400--Sobic003G383500 Sobic003G295800 Sobic003G295800 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic003G383600 Sobic003G383600 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G211100 Sobic007G211100 Sobic007G013400--Sobic007G211100 Sobic003G030900--Sobic001G027600 Sobic003G030900--Sobic004G044000 Sobic003G030900--Sobic006G248200 Sobic003G030900--Sobic001G040000 Sobic001G240000 Sobic001G240000 Sobic003G030900--Sobic001G240000 Sobic003G030900--Sobic007G013400 Sobic003G030900--Sobic002G242600 Sobic004G317900 Sobic004G317900 Sobic003G030900--Sobic004G317900 Sobic001G531200 Sobic001G531200 Sobic003G030900--Sobic001G531200 Sobic003G383500--Sobic007G013400 Sobic003G383500--Sobic009G001500 Sobic003G383500--Sobic003G295800 Sobic003G383500--Sobic007G211100 Sobic003G383500--Sobic003G261200 Sobic003G383500--Sobic004G044000 Sobic003G383500--Sobic003G383600 Sobic005G110481 Sobic005G110481 Sobic003G383500--Sobic005G110481 Sobic004G109000 Sobic004G109000 Sobic003G383500--Sobic004G109000 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic009G001500--Sobic004G044000 Sobic009G001500--Sobic003G383600 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic009G001500--Sobic001G383900 Sobic006G025700 Sobic006G025700 Sobic002G190100--Sobic006G025700 Sobic006G263800 Sobic006G263800 Sobic002G190100--Sobic006G263800 Sobic008G130700 Sobic008G130700 Sobic002G190100--Sobic008G130700 Sobic002G190100--Sobic002G242600 Sobic002G190100--Sobic001G027600 Sobic002G190100--Sobic004G044000 Sobic004G253800 Sobic004G253800 Sobic002G190100--Sobic004G253800 Sobic009G059100 Sobic009G059100 Sobic002G190100--Sobic009G059100 Sobic001G120000 Sobic001G120000 Sobic002G190100--Sobic001G120000 Sobic001G453300 Sobic001G453300 Sobic001G027600--Sobic001G453300 Sobic001G427000 Sobic001G427000 Sobic001G027600--Sobic001G427000 Sobic001G027600--Sobic001G076500 Sobic001G027600--Sobic004G044000 Sobic001G027600--Sobic004G317900 Sobic001G027600--Sobic001G383900 Sobic001G027600--Sobic003G295800 Sobic004G191200 Sobic004G191200 Sobic001G027600--Sobic004G191200 Sobic001G027600--Sobic006G280050 Sobic003G386300 Sobic003G386300 Sobic001G475600--Sobic003G386300 Sobic001G475600--Sobic007G013400 Sobic001G475600--Sobic001G040000 Sobic001G475600--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic001G475600--Sobic004G335800 Sobic010G095200 Sobic010G095200 Sobic001G475600--Sobic010G095200 Sobic001G475600--Sobic003G295800 Sobic001G122400 Sobic001G122400 Sobic001G475600--Sobic001G122400 Sobic007G143700 Sobic007G143700 Sobic001G475600--Sobic007G143700 Sobic006G248200--Sobic003G386300 Sobic006G248200--Sobic001G240000 Sobic006G248200--Sobic001G531200 Sobic002G198600 Sobic002G198600 Sobic006G248200--Sobic002G198600 Sobic006G248200--Sobic003G030900 Sobic006G248200--Sobic001G475600 Sobic004G054500 Sobic004G054500 Sobic006G248200--Sobic004G054500 Sobic002G305700 Sobic002G305700 Sobic006G248200--Sobic002G305700 Sobic004G311100 Sobic004G311100 Sobic006G248200--Sobic004G311100
Octagon: transcription factors


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