Gene annotation
Transcriptome id Sobic.003G292300.1
Synonym Sb03g034270, OVA4
Functional annotation tRNA synthetase, putative, expressed
UniProt C5XK01
Pfam PF00579
Panther DB PTHR10055 PTHR10055:SF9
NCBI CDD KOG2713; Mitochondrial tryptophanyl-tRNA synthetase
KEGG Orthology K01867; WARS, tryptophanyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0006436tryptophanyl-tRNA aminoacylation GO:0005737cytoplasm GO:0004830tryptophan-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT2G25840 : Nucleotidylyl transferase superfamily protein
RAP-DB (Rice) LOC_Os01g54020.1 : tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a027643
Brachypodium KQK09682 , KQK09683
Barley HORVU3Hr1G070780.7 , HORVU3Hr1G070780.1 , HORVU3Hr1G070780.3 , HORVU3Hr1G070780.2 , HORVU3Hr1G070780.5 , HORVU3Hr1G070780.4 , HORVU3Hr1G070780.6
Wheat TraesCS3B02G309400 , TraesCS3A02G275700 , TraesCS3A02G275700 , TraesCS3D02G275600 , TraesCS3D02G275600
Populus -


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cDNA sequences
Sobic.003G292300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110481 - -
2 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
3 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
4 Sobic.007G090537 - K10956: protein transport protein SEC61 subunit alpha
5 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
6 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
7 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
8 Sobic.003G383600 - -
9 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
10 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
11 Sobic.010G215500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
12 Sobic.007G101300 expressed protein -
13 Sobic.003G383500 rhodanese-like, putative, expressed -
14 Sobic.009G098100 T-complex protein, putative, expressed -
15 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
16 Sobic.002G013700 PPR2, putative, expressed -
17 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
18 Sobic.003G324700 expressed protein -
19 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
20 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase


Gene co-expression network
sample Sobic003G292300 Sobic003G292300 Sobic005G110481 Sobic005G110481 Sobic003G292300--Sobic005G110481 Sobic001G069500 Sobic001G069500 Sobic003G292300--Sobic001G069500 Sobic010G011200 Sobic010G011200 Sobic003G292300--Sobic010G011200 Sobic007G090537 Sobic007G090537 Sobic003G292300--Sobic007G090537 Sobic009G001500 Sobic009G001500 Sobic003G292300--Sobic009G001500 Sobic003G295800 Sobic003G295800 Sobic003G292300--Sobic003G295800 Sobic003G225100 Sobic003G225100 Sobic003G292300--Sobic003G225100 Sobic003G383600 Sobic003G383600 Sobic003G292300--Sobic003G383600 Sobic007G013400 Sobic007G013400 Sobic003G292300--Sobic007G013400 Sobic005G110481--Sobic010G011200 Sobic001G148200 Sobic001G148200 Sobic005G110481--Sobic001G148200 Sobic007G171800 Sobic007G171800 Sobic005G110481--Sobic007G171800 Sobic009G042200 Sobic009G042200 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic009G104700 Sobic009G104700 Sobic005G110481--Sobic009G104700 Sobic005G110481--Sobic007G013400 Sobic002G013700 Sobic002G013700 Sobic005G110481--Sobic002G013700 Sobic002G251400 Sobic002G251400 Sobic005G110481--Sobic002G251400 Sobic009G098100 Sobic009G098100 Sobic001G069500--Sobic009G098100 Sobic001G188600 Sobic001G188600 Sobic001G069500--Sobic001G188600 Sobic007G211100 Sobic007G211100 Sobic001G069500--Sobic007G211100 Sobic001G069500--Sobic003G295800 Sobic001G069500--Sobic003G383600 Sobic008G123600 Sobic008G123600 Sobic001G069500--Sobic008G123600 Sobic001G069500--Sobic009G001500 Sobic008G030000 Sobic008G030000 Sobic001G069500--Sobic008G030000 Sobic001G069500--Sobic007G013400 Sobic010G011200--Sobic005G110481 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic010G011200--Sobic001G148200 Sobic010G011200--Sobic002G013700 Sobic010G011200--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic010G011200--Sobic001G383900 Sobic010G011200--Sobic009G104700 Sobic010G011200--Sobic009G098100 Sobic009G130800 Sobic009G130800 Sobic007G090537--Sobic009G130800 Sobic010G095200 Sobic010G095200 Sobic007G090537--Sobic010G095200 Sobic003G261200 Sobic003G261200 Sobic007G090537--Sobic003G261200 Sobic007G090537--Sobic003G292300 Sobic007G090537--Sobic007G171800 Sobic007G090537--Sobic003G225100 Sobic007G090537--Sobic005G110481 Sobic004G164100 Sobic004G164100 Sobic007G090537--Sobic004G164100 Sobic001G058400 Sobic001G058400 Sobic007G090537--Sobic001G058400 Sobic009G001500--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic004G044000 Sobic004G044000 Sobic009G001500--Sobic004G044000 Sobic009G001500--Sobic003G383600 Sobic009G001500--Sobic007G211100 Sobic009G001500--Sobic008G030000 Sobic009G001500--Sobic001G383900 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500 Sobic001G122400 Sobic001G122400 Sobic003G225100--Sobic001G122400 Sobic003G225100--Sobic007G171800 Sobic003G225100--Sobic005G110481 Sobic003G225100--Sobic010G095200 Sobic004G335800 Sobic004G335800 Sobic003G225100--Sobic004G335800 Sobic003G225100--Sobic007G013400 Sobic003G225100--Sobic002G251400 Sobic003G386300 Sobic003G386300 Sobic003G225100--Sobic003G386300 Sobic001G527100 Sobic001G527100 Sobic003G225100--Sobic001G527100 Sobic003G383600--Sobic003G295800 Sobic003G383600--Sobic007G013400 Sobic003G383600--Sobic008G123600 Sobic003G383600--Sobic001G069500 Sobic003G383600--Sobic009G001500 Sobic003G383600--Sobic008G030000 Sobic003G383600--Sobic009G098100 Sobic010G215500 Sobic010G215500 Sobic003G383600--Sobic010G215500 Sobic003G383600--Sobic003G383500 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic007G013400--Sobic002G251400 Sobic007G013400--Sobic003G383600 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100
Octagon: transcription factors


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