Gene annotation
Transcriptome id Sobic.003G136400.1
Synonym ROC4, Sb03g011610
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
peptidyl-prolyl cis-trans isomerase, putative, expressed
UniProt C5XHY3
Pfam PF00160
Panther DB PTHR11071 PTHR11071:SF247
NCBI CDD KOG0880; Peptidyl-prolyl cis-trans isomerase
KEGG Orthology K03768; PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
Gene Ontology GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT3G62030 : rotamase CYP 4
RAP-DB (Rice) LOC_Os01g18210.1 : peptidyl-prolyl cis-trans isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a035172 , Zm00025a008223 , Zm00025a013129
Brachypodium KQK03990
Barley HORVU3Hr1G030750.1 , HORVU3Hr1G030750.2 , HORVU3Hr1G030750.3 , HORVU3Hr1G030750.6 , HORVU3Hr1G030750.7 , HORVU3Hr1G030750.4 , HORVU3Hr1G030750.5
Wheat TraesCS3A02G151100 , TraesCS3B02G178000 , TraesCS3D02G159000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
2 Sobic.001G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed -
3 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
4 Sobic.006G114300 pentatricopeptide, putative, expressed -
5 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
6 Sobic.002G078000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KHG/KDPG aldolase, putative, expressed -
7 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.006G249100 expressed protein -
9 Sobic.002G190800 expressed protein -
10 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
11 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
12 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
13 Sobic.001G228300 SAP domain containing protein, expressed -
14 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -
15 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
16 Sobic.002G235600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G253800 - -
18 Sobic.002G124100 - -
19 Sobic.004G291500 LTPL113 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.002G064400 expressed protein -


Gene co-expression network
sample Sobic003G136400 Sobic003G136400 Sobic001G188600 Sobic001G188600 Sobic003G136400--Sobic001G188600 Sobic001G215300 Sobic001G215300 Sobic003G136400--Sobic001G215300 Sobic001G357200 Sobic001G357200 Sobic003G136400--Sobic001G357200 Sobic006G114300 Sobic006G114300 Sobic003G136400--Sobic006G114300 Sobic001G172300 Sobic001G172300 Sobic003G136400--Sobic001G172300 Sobic002G078000 Sobic002G078000 Sobic003G136400--Sobic002G078000 Sobic001G395300 Sobic001G395300 Sobic003G136400--Sobic001G395300 Sobic006G249100 Sobic006G249100 Sobic003G136400--Sobic006G249100 Sobic002G190800 Sobic002G190800 Sobic003G136400--Sobic002G190800 Sobic001G069500 Sobic001G069500 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G188600--Sobic001G357200 Sobic009G098100 Sobic009G098100 Sobic001G188600--Sobic009G098100 Sobic010G012900 Sobic010G012900 Sobic001G188600--Sobic010G012900 Sobic004G109000 Sobic004G109000 Sobic001G188600--Sobic004G109000 Sobic007G211100 Sobic007G211100 Sobic001G188600--Sobic007G211100 Sobic004G253800 Sobic004G253800 Sobic001G188600--Sobic004G253800 Sobic008G030000 Sobic008G030000 Sobic001G188600--Sobic008G030000 Sobic001G215300--Sobic004G109000 Sobic001G142400 Sobic001G142400 Sobic001G215300--Sobic001G142400 Sobic002G064400 Sobic002G064400 Sobic001G215300--Sobic002G064400 Sobic002G190100 Sobic002G190100 Sobic001G215300--Sobic002G190100 Sobic008G130700 Sobic008G130700 Sobic001G215300--Sobic008G130700 Sobic001G236800 Sobic001G236800 Sobic001G215300--Sobic001G236800 Sobic001G215300--Sobic001G188600 Sobic007G090415 Sobic007G090415 Sobic001G215300--Sobic007G090415 Sobic001G215300--Sobic006G114300 Sobic001G357200--Sobic001G188600 Sobic001G357200--Sobic006G114300 Sobic001G357200--Sobic010G012900 Sobic009G001500 Sobic009G001500 Sobic001G357200--Sobic009G001500 Sobic001G357200--Sobic008G030000 Sobic007G034500 Sobic007G034500 Sobic001G357200--Sobic007G034500 Sobic008G123600 Sobic008G123600 Sobic001G357200--Sobic008G123600 Sobic001G357200--Sobic001G069500 Sobic003G383500 Sobic003G383500 Sobic001G357200--Sobic003G383500 Sobic006G114300--Sobic001G188600 Sobic006G114300--Sobic001G357200 Sobic006G114300--Sobic004G109000 Sobic006G114300--Sobic001G069500 Sobic006G114300--Sobic010G012900 Sobic006G114300--Sobic003G383500 Sobic006G114300--Sobic004G253800 Sobic006G114300--Sobic007G211100 Sobic007G013400 Sobic007G013400 Sobic006G114300--Sobic007G013400 Sobic001G172300--Sobic010G012900 Sobic001G347800 Sobic001G347800 Sobic001G172300--Sobic001G347800 Sobic003G392000 Sobic003G392000 Sobic001G172300--Sobic003G392000 Sobic001G172300--Sobic001G188600 Sobic001G172300--Sobic002G190800 Sobic001G172300--Sobic006G114300 Sobic002G360200 Sobic002G360200 Sobic001G172300--Sobic002G360200 Sobic001G172300--Sobic001G357200 Sobic001G172300--Sobic004G253800 Sobic001G013900 Sobic001G013900 Sobic002G078000--Sobic001G013900 Sobic003G333700 Sobic003G333700 Sobic002G078000--Sobic003G333700 Sobic001G104300 Sobic001G104300 Sobic002G078000--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic002G078000--Sobic005G022000 Sobic003G223000 Sobic003G223000 Sobic002G078000--Sobic003G223000 Sobic002G078000--Sobic002G360200 Sobic002G078000--Sobic001G188600 Sobic002G078000--Sobic010G012900 Sobic002G078000--Sobic004G109000 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic002G404900 Sobic002G404900 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic006G237100 Sobic006G237100 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic002G140000 Sobic002G140000 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic007G116100 Sobic007G116100 Sobic001G395300--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic001G395300--Sobic010G027200 Sobic008G171100 Sobic008G171100 Sobic006G249100--Sobic008G171100 Sobic006G249100--Sobic002G064400 Sobic006G249100--Sobic003G136400 Sobic006G249100--Sobic001G215300 Sobic006G249100--Sobic004G109000 Sobic009G055900 Sobic009G055900 Sobic006G249100--Sobic009G055900 Sobic006G249100--Sobic002G190100 Sobic006G249100--Sobic004G253800 Sobic002G242600 Sobic002G242600 Sobic006G249100--Sobic002G242600 Sobic004G044000 Sobic004G044000 Sobic002G190800--Sobic004G044000 Sobic002G190800--Sobic010G012900 Sobic002G190800--Sobic001G172300 Sobic002G190800--Sobic007G034500 Sobic001G383900 Sobic001G383900 Sobic002G190800--Sobic001G383900 Sobic002G190800--Sobic003G392000 Sobic001G120000 Sobic001G120000 Sobic002G190800--Sobic001G120000 Sobic002G190800--Sobic001G357200 Sobic002G190800--Sobic001G188600
Octagon: transcription factors


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