Gene annotation
Transcriptome id Sobic.007G166600.1
Synonym CSD2, Sb07g023950, CZSOD2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
copper/zinc superoxide dismutase, putative, expressed
UniProt C5YN49
Pfam PF00080
Panther DB PTHR10003 PTHR10003:SF34
NCBI CDD KOG0441; Cu2+/Zn2+ superoxide dismutase SOD1
KEGG Orthology K04565; superoxide dismutase, Cu-Zn family
Gene Ontology GO:0006801; superoxide metabolic process GO:0009507chloroplast


Orthologs (automatic annotation)
TAIR AT2G28190 : copper/zinc superoxide dismutase 2
RAP-DB (Rice) LOC_Os08g44770.1 : copper/zinc superoxide dismutase, putative, expressed
MaizeGDB (Corn) Zm00025a005575
Brachypodium KQJ99399
Barley HORVU7Hr1G060130.3 , HORVU7Hr1G060130.2 , HORVU7Hr1G060130.1
Wheat TraesCS7D02G290700 , TraesCS7D02G290700 , TraesCS7A02G292100 , TraesCS7B02G197300
Populus PNT42503 , PNT18810 , PNT42505 , PNT42504 , PNT42506 , PNT18807 , PNT18806 , PNT18805 , PNT18804 , PNT18809 , PNT18808


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cDNA sequences
Sobic.007G166600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G135701 - -
2 Sobic.004G319800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chaperonin, putative, expressed K04078: groES, chaperonin GroES
3 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
4 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
5 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
6 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
7 Sobic.005G105850 - K16296: serine carboxypeptidase-like clade I
8 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
9 Sobic.010G202700 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
10 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
11 Sobic.004G296800 3-isopropylmalate dehydratase small subunit 2, putative, expressed K01704: leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
12 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
14 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
15 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
16 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
17 Sobic.003G333700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine synthase, chloroplast precursor, putative, expressed K01738: cysteine synthase
18 Sobic.004G070800 tic21, putative, expressed -
19 Sobic.006G114300 pentatricopeptide, putative, expressed -
20 Sobic.008G143600 expressed protein -


Gene co-expression network
sample Sobic007G166600 Sobic007G166600 Sobic008G135701 Sobic008G135701 Sobic007G166600--Sobic008G135701 Sobic004G319800 Sobic004G319800 Sobic007G166600--Sobic004G319800 Sobic009G055900 Sobic009G055900 Sobic007G166600--Sobic009G055900 Sobic001G104300 Sobic001G104300 Sobic007G166600--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic007G166600--Sobic005G022000 Sobic007G026200 Sobic007G026200 Sobic007G166600--Sobic007G026200 Sobic005G105850 Sobic005G105850 Sobic007G166600--Sobic005G105850 Sobic007G211100 Sobic007G211100 Sobic007G166600--Sobic007G211100 Sobic010G202700 Sobic010G202700 Sobic007G166600--Sobic010G202700 Sobic008G135701--Sobic007G166600 Sobic001G463500 Sobic001G463500 Sobic008G135701--Sobic001G463500 Sobic007G172600 Sobic007G172600 Sobic008G135701--Sobic007G172600 Sobic002G317600 Sobic002G317600 Sobic008G135701--Sobic002G317600 Sobic006G216000 Sobic006G216000 Sobic008G135701--Sobic006G216000 Sobic003G420900 Sobic003G420900 Sobic008G135701--Sobic003G420900 Sobic002G253100 Sobic002G253100 Sobic008G135701--Sobic002G253100 Sobic008G173000 Sobic008G173000 Sobic008G135701--Sobic008G173000 Sobic008G083400 Sobic008G083400 Sobic008G135701--Sobic008G083400 Sobic008G181400 Sobic008G181400 Sobic004G319800--Sobic008G181400 Sobic008G075200 Sobic008G075200 Sobic004G319800--Sobic008G075200 Sobic004G319800--Sobic007G166600 Sobic009G002900 Sobic009G002900 Sobic004G319800--Sobic009G002900 Sobic001G379100 Sobic001G379100 Sobic004G319800--Sobic001G379100 Sobic004G319800--Sobic002G317600 Sobic006G084500 Sobic006G084500 Sobic004G319800--Sobic006G084500 Sobic004G319800--Sobic007G026200 Sobic003G333700 Sobic003G333700 Sobic004G319800--Sobic003G333700 Sobic008G143600 Sobic008G143600 Sobic009G055900--Sobic008G143600 Sobic002G377300 Sobic002G377300 Sobic009G055900--Sobic002G377300 Sobic001G405000 Sobic001G405000 Sobic009G055900--Sobic001G405000 Sobic004G109000 Sobic004G109000 Sobic009G055900--Sobic004G109000 Sobic009G059100 Sobic009G059100 Sobic009G055900--Sobic009G059100 Sobic006G001400 Sobic006G001400 Sobic009G055900--Sobic006G001400 Sobic006G060500 Sobic006G060500 Sobic009G055900--Sobic006G060500 Sobic004G243400 Sobic004G243400 Sobic009G055900--Sobic004G243400 Sobic001G389600 Sobic001G389600 Sobic009G055900--Sobic001G389600 Sobic002G078000 Sobic002G078000 Sobic001G104300--Sobic002G078000 Sobic006G281066 Sobic006G281066 Sobic001G104300--Sobic006G281066 Sobic001G104300--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic001G104300--Sobic003G165800 Sobic004G070800 Sobic004G070800 Sobic001G104300--Sobic004G070800 Sobic001G013900 Sobic001G013900 Sobic001G104300--Sobic001G013900 Sobic001G104300--Sobic003G333700 Sobic010G134500 Sobic010G134500 Sobic001G104300--Sobic010G134500 Sobic001G104300--Sobic004G109000 Sobic005G022000--Sobic002G078000 Sobic005G022000--Sobic001G104300 Sobic002G363500 Sobic002G363500 Sobic005G022000--Sobic002G363500 Sobic005G022000--Sobic006G281066 Sobic006G114300 Sobic006G114300 Sobic005G022000--Sobic006G114300 Sobic005G022000--Sobic007G026200 Sobic002G360200 Sobic002G360200 Sobic005G022000--Sobic002G360200 Sobic005G022000--Sobic007G166600 Sobic001G389500 Sobic001G389500 Sobic005G022000--Sobic001G389500 Sobic001G069500 Sobic001G069500 Sobic007G026200--Sobic001G069500 Sobic007G026200--Sobic007G211100 Sobic001G188600 Sobic001G188600 Sobic007G026200--Sobic001G188600 Sobic007G026200--Sobic004G109000 Sobic002G189600 Sobic002G189600 Sobic007G026200--Sobic002G189600 Sobic007G026200--Sobic006G281066 Sobic010G012900 Sobic010G012900 Sobic007G026200--Sobic010G012900 Sobic001G357200 Sobic001G357200 Sobic007G026200--Sobic001G357200 Sobic004G296800 Sobic004G296800 Sobic007G026200--Sobic004G296800 Sobic005G105850--Sobic007G166600 Sobic005G165400 Sobic005G165400 Sobic005G105850--Sobic005G165400 Sobic005G105850--Sobic010G202700 Sobic002G102700 Sobic002G102700 Sobic005G105850--Sobic002G102700 Sobic006G147500 Sobic006G147500 Sobic005G105850--Sobic006G147500 Sobic005G105850--Sobic006G001400 Sobic005G105850--Sobic006G084500 Sobic005G105850--Sobic001G188600 Sobic005G218201 Sobic005G218201 Sobic005G105850--Sobic005G218201 Sobic007G211100--Sobic001G069500 Sobic007G013400 Sobic007G013400 Sobic007G211100--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic007G211100--Sobic003G383500 Sobic009G001500 Sobic009G001500 Sobic007G211100--Sobic009G001500 Sobic007G211100--Sobic004G109000 Sobic007G211100--Sobic001G188600 Sobic003G295800 Sobic003G295800 Sobic007G211100--Sobic003G295800 Sobic008G123600 Sobic008G123600 Sobic007G211100--Sobic008G123600 Sobic009G098100 Sobic009G098100 Sobic007G211100--Sobic009G098100 Sobic010G202700--Sobic006G001400 Sobic005G196500 Sobic005G196500 Sobic010G202700--Sobic005G196500 Sobic007G037700 Sobic007G037700 Sobic010G202700--Sobic007G037700 Sobic006G233600 Sobic006G233600 Sobic010G202700--Sobic006G233600 Sobic010G202700--Sobic001G188600 Sobic010G202700--Sobic006G147500 Sobic010G107200 Sobic010G107200 Sobic010G202700--Sobic010G107200 Sobic001G172300 Sobic001G172300 Sobic010G202700--Sobic001G172300 Sobic001G275800 Sobic001G275800 Sobic010G202700--Sobic001G275800
Octagon: transcription factors


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