Gene annotation
Transcriptome id Sobic.004G296800.1
Synonym Sb04g033080
Functional annotation 3-isopropylmalate dehydratase small subunit 2, putative, expressed
UniProt C5XRZ8
Pfam PF00694
Panther DB PTHR11670
NCBI CDD -
KEGG Orthology K01704; leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
Gene Ontology GO:0008152; metabolic process


Orthologs (automatic annotation)
TAIR AT2G43090 : Aconitase/3-isopropylmalate dehydratase protein
RAP-DB (Rice) LOC_Os02g43830.1 : 3-isopropylmalate dehydratase small subunit 2, putative, expressed
MaizeGDB (Corn) Zm00025a020893
Brachypodium -
Barley HORVU6Hr1G064180.1 , HORVU6Hr1G062440.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G296800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
2 Sobic.001G543700 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
3 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
4 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
5 Sobic.002G207900 WAX2, putative, expressed -
6 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
7 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
8 Sobic.001G541300 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.005G218201 - -
10 Sobic.004G070800 tic21, putative, expressed -
11 Sobic.001G463500 FAD-linked sulfhydryl oxidase ALR, putative, expressed K17783: ERV1, GFER, mitochondrial FAD-linked sulfhydryl oxidase
12 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
13 Sobic.005G218600 NBS-LRR disease resistance protein, putative, expressed -
14 Sobic.006G238100 LTPL126 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.004G249400 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
16 Sobic.001G453200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
17 Sobic.001G255300 Protein tyrosine decarboxylase 4 (OS)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
18 Sobic.003G120500 transmembrane protein 136, putative, expressed -
19 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
20 Sobic.003G383500 rhodanese-like, putative, expressed -


Gene co-expression network
sample Sobic004G296800 Sobic004G296800 Sobic001G376700 Sobic001G376700 Sobic004G296800--Sobic001G376700 Sobic001G543700 Sobic001G543700 Sobic004G296800--Sobic001G543700 Sobic004G044200 Sobic004G044200 Sobic004G296800--Sobic004G044200 Sobic003G420900 Sobic003G420900 Sobic004G296800--Sobic003G420900 Sobic002G207900 Sobic002G207900 Sobic004G296800--Sobic002G207900 Sobic007G026200 Sobic007G026200 Sobic004G296800--Sobic007G026200 Sobic008G123600 Sobic008G123600 Sobic004G296800--Sobic008G123600 Sobic001G541300 Sobic001G541300 Sobic004G296800--Sobic001G541300 Sobic005G218201 Sobic005G218201 Sobic004G296800--Sobic005G218201 Sobic001G376700--Sobic004G296800 Sobic006G084500 Sobic006G084500 Sobic001G376700--Sobic006G084500 Sobic001G376700--Sobic004G044200 Sobic009G124000 Sobic009G124000 Sobic001G376700--Sobic009G124000 Sobic001G376700--Sobic003G420900 Sobic003G292300 Sobic003G292300 Sobic001G376700--Sobic003G292300 Sobic009G180800 Sobic009G180800 Sobic001G376700--Sobic009G180800 Sobic001G376700--Sobic008G123600 Sobic009G001500 Sobic009G001500 Sobic001G376700--Sobic009G001500 Sobic010G221600 Sobic010G221600 Sobic001G543700--Sobic010G221600 Sobic004G214400 Sobic004G214400 Sobic001G543700--Sobic004G214400 Sobic006G281066 Sobic006G281066 Sobic001G543700--Sobic006G281066 Sobic003G236300 Sobic003G236300 Sobic001G543700--Sobic003G236300 Sobic006G082500 Sobic006G082500 Sobic001G543700--Sobic006G082500 Sobic001G543700--Sobic004G296800 Sobic003G071600 Sobic003G071600 Sobic001G543700--Sobic003G071600 Sobic003G265500 Sobic003G265500 Sobic001G543700--Sobic003G265500 Sobic001G478600 Sobic001G478600 Sobic001G543700--Sobic001G478600 Sobic004G044200--Sobic009G001500 Sobic007G013400 Sobic007G013400 Sobic004G044200--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic004G044200--Sobic003G295800 Sobic004G044200--Sobic001G541300 Sobic007G185100 Sobic007G185100 Sobic004G044200--Sobic007G185100 Sobic003G328200 Sobic003G328200 Sobic004G044200--Sobic003G328200 Sobic005G218600 Sobic005G218600 Sobic004G044200--Sobic005G218600 Sobic004G044200--Sobic005G218201 Sobic003G386300 Sobic003G386300 Sobic004G044200--Sobic003G386300 Sobic003G420900--Sobic001G376700 Sobic003G420900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic003G420900--Sobic003G165800 Sobic009G231100 Sobic009G231100 Sobic003G420900--Sobic009G231100 Sobic002G333100 Sobic002G333100 Sobic003G420900--Sobic002G333100 Sobic004G275600 Sobic004G275600 Sobic003G420900--Sobic004G275600 Sobic010G134500 Sobic010G134500 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic003G420900--Sobic001G543700 Sobic001G453200 Sobic001G453200 Sobic002G207900--Sobic001G453200 Sobic004G249400 Sobic004G249400 Sobic002G207900--Sobic004G249400 Sobic001G255300 Sobic001G255300 Sobic002G207900--Sobic001G255300 Sobic002G207900--Sobic001G541300 Sobic005G029400 Sobic005G029400 Sobic002G207900--Sobic005G029400 Sobic003G120500 Sobic003G120500 Sobic002G207900--Sobic003G120500 Sobic003G114200 Sobic003G114200 Sobic002G207900--Sobic003G114200 Sobic001G379300 Sobic001G379300 Sobic002G207900--Sobic001G379300 Sobic002G141100 Sobic002G141100 Sobic002G207900--Sobic002G141100 Sobic001G069500 Sobic001G069500 Sobic007G026200--Sobic001G069500 Sobic007G211100 Sobic007G211100 Sobic007G026200--Sobic007G211100 Sobic001G188600 Sobic001G188600 Sobic007G026200--Sobic001G188600 Sobic004G109000 Sobic004G109000 Sobic007G026200--Sobic004G109000 Sobic002G189600 Sobic002G189600 Sobic007G026200--Sobic002G189600 Sobic007G026200--Sobic006G281066 Sobic010G012900 Sobic010G012900 Sobic007G026200--Sobic010G012900 Sobic001G357200 Sobic001G357200 Sobic007G026200--Sobic001G357200 Sobic007G026200--Sobic004G296800 Sobic004G076000 Sobic004G076000 Sobic008G123600--Sobic004G076000 Sobic003G383600 Sobic003G383600 Sobic008G123600--Sobic003G383600 Sobic001G003600 Sobic001G003600 Sobic008G123600--Sobic001G003600 Sobic001G323801 Sobic001G323801 Sobic008G123600--Sobic001G323801 Sobic008G123600--Sobic001G069500 Sobic001G435600 Sobic001G435600 Sobic008G123600--Sobic001G435600 Sobic009G115050 Sobic009G115050 Sobic008G123600--Sobic009G115050 Sobic008G123600--Sobic003G295800 Sobic006G172700 Sobic006G172700 Sobic008G123600--Sobic006G172700 Sobic001G541300--Sobic002G141100 Sobic001G541300--Sobic003G114200 Sobic007G170800 Sobic007G170800 Sobic001G541300--Sobic007G170800 Sobic002G416950 Sobic002G416950 Sobic001G541300--Sobic002G416950 Sobic004G060700 Sobic004G060700 Sobic001G541300--Sobic004G060700 Sobic006G238100 Sobic006G238100 Sobic001G541300--Sobic006G238100 Sobic001G541300--Sobic004G249400 Sobic001G541300--Sobic001G379300 Sobic007G009600 Sobic007G009600 Sobic001G541300--Sobic007G009600 Sobic005G218201--Sobic005G218600 Sobic005G218201--Sobic004G044200 Sobic002G209800 Sobic002G209800 Sobic005G218201--Sobic002G209800 Sobic004G038300 Sobic004G038300 Sobic005G218201--Sobic004G038300 Sobic005G218201--Sobic003G120500 Sobic005G200600 Sobic005G200600 Sobic005G218201--Sobic005G200600 Sobic005G218201--Sobic006G238100 Sobic005G218201--Sobic001G541300 Sobic005G218201--Sobic001G255300
Octagon: transcription factors


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