Gene annotation
Transcriptome id Sobic.004G319800.1
Synonym Sb04g035040, CHCPN10, CPN20, ATCPN21, CPN21, CPN10
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
chaperonin, putative, expressed
UniProt C5XTN5
Pfam PF00166
Panther DB PTHR10772:SF0 PTHR10772
NCBI CDD KOG1641; Mitochondrial chaperonin
KEGG Orthology K04078; groES, chaperonin GroES
Gene Ontology GO:0005737; cytoplasm GO:0006457protein folding


Orthologs (automatic annotation)
TAIR AT5G20720 : chaperonin 20
RAP-DB (Rice) LOC_Os06g09679.1 : chaperonin, putative, expressed
MaizeGDB (Corn) Zm00025a033017
Brachypodium KQK02044
Barley HORVU7Hr1G033900.8 , HORVU5Hr1G062310.2 , HORVU5Hr1G062310.1 , HORVU7Hr1G033900.6 , HORVU7Hr1G033900.7 , HORVU7Hr1G033900.4 , HORVU7Hr1G033900.5 , HORVU7Hr1G033900.2 , HORVU7Hr1G033900.3 , HORVU7Hr1G033900.1
Wheat TraesCS7A02G161000 , TraesCS7A02G161000
Populus -


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cDNA sequences
Sobic.004G319800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G181400 Fatty acid hydroxylase 1 FAH1 (Os)(PubMedID : 27208977)@fatty acid hydroxylase, putative, expressed -
2 Sobic.008G075200 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed K01627: 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)
3 Sobic.007G166600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
4 Sobic.009G002900 expressed protein -
5 Sobic.001G379100 basic helix-loop-helix domain containing protein, expressed -
6 Sobic.002G317600 endoribonuclease, putative, expressed -
7 Sobic.006G084500 expressed protein -
8 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
9 Sobic.003G333700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine synthase, chloroplast precursor, putative, expressed K01738: cysteine synthase
10 Sobic.003G223100 polygalacturonase, putative, expressed -
11 Sobic.007G079600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
12 Sobic.003G259500 - -
13 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
14 Sobic.003G148400 Pectinesterase 1 (Precursor)(PubMedID : 26186930)@pectinesterase, putative, expressed K01051: pectinesterase
15 Sobic.003G250000 peroxidase family protein, expressed K00430: peroxidase
16 Sobic.004G047400 uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547, putative, expressed K06041: kdsD, arabinose-5-phosphate isomerase
17 Sobic.004G263000 expressed protein -
18 Sobic.002G280500 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.003G071400 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
20 Sobic.001G502500 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic004G319800 Sobic004G319800 Sobic008G181400 Sobic008G181400 Sobic004G319800--Sobic008G181400 Sobic008G075200 Sobic008G075200 Sobic004G319800--Sobic008G075200 Sobic007G166600 Sobic007G166600 Sobic004G319800--Sobic007G166600 Sobic009G002900 Sobic009G002900 Sobic004G319800--Sobic009G002900 Sobic001G379100 Sobic001G379100 Sobic004G319800--Sobic001G379100 Sobic002G317600 Sobic002G317600 Sobic004G319800--Sobic002G317600 Sobic006G084500 Sobic006G084500 Sobic004G319800--Sobic006G084500 Sobic007G026200 Sobic007G026200 Sobic004G319800--Sobic007G026200 Sobic003G333700 Sobic003G333700 Sobic004G319800--Sobic003G333700 Sobic008G181400--Sobic004G319800 Sobic008G181400--Sobic008G075200 Sobic008G181400--Sobic009G002900 Sobic008G066700 Sobic008G066700 Sobic008G181400--Sobic008G066700 Sobic008G181400--Sobic002G317600 Sobic009G055900 Sobic009G055900 Sobic008G181400--Sobic009G055900 Sobic003G223100 Sobic003G223100 Sobic008G181400--Sobic003G223100 Sobic003G261200 Sobic003G261200 Sobic008G181400--Sobic003G261200 Sobic008G143600 Sobic008G143600 Sobic008G181400--Sobic008G143600 Sobic008G075200--Sobic004G319800 Sobic004G047400 Sobic004G047400 Sobic008G075200--Sobic004G047400 Sobic008G075200--Sobic002G317600 Sobic008G075200--Sobic008G181400 Sobic008G075200--Sobic003G223100 Sobic009G151100 Sobic009G151100 Sobic008G075200--Sobic009G151100 Sobic009G231100 Sobic009G231100 Sobic008G075200--Sobic009G231100 Sobic008G075200--Sobic009G002900 Sobic004G253500 Sobic004G253500 Sobic008G075200--Sobic004G253500 Sobic008G135701 Sobic008G135701 Sobic007G166600--Sobic008G135701 Sobic007G166600--Sobic004G319800 Sobic007G166600--Sobic009G055900 Sobic001G104300 Sobic001G104300 Sobic007G166600--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic007G166600--Sobic005G022000 Sobic007G166600--Sobic007G026200 Sobic005G105850 Sobic005G105850 Sobic007G166600--Sobic005G105850 Sobic007G211100 Sobic007G211100 Sobic007G166600--Sobic007G211100 Sobic010G202700 Sobic010G202700 Sobic007G166600--Sobic010G202700 Sobic003G250000 Sobic003G250000 Sobic009G002900--Sobic003G250000 Sobic003G078300 Sobic003G078300 Sobic009G002900--Sobic003G078300 Sobic009G002900--Sobic004G253500 Sobic009G177200 Sobic009G177200 Sobic009G002900--Sobic009G177200 Sobic003G223000 Sobic003G223000 Sobic009G002900--Sobic003G223000 Sobic001G461800 Sobic001G461800 Sobic009G002900--Sobic001G461800 Sobic008G113300 Sobic008G113300 Sobic009G002900--Sobic008G113300 Sobic006G093200 Sobic006G093200 Sobic009G002900--Sobic006G093200 Sobic001G199500 Sobic001G199500 Sobic009G002900--Sobic001G199500 Sobic001G164500 Sobic001G164500 Sobic001G379100--Sobic001G164500 Sobic010G096200 Sobic010G096200 Sobic001G379100--Sobic010G096200 Sobic003G148400 Sobic003G148400 Sobic001G379100--Sobic003G148400 Sobic002G280500 Sobic002G280500 Sobic001G379100--Sobic002G280500 Sobic001G127700 Sobic001G127700 Sobic001G379100--Sobic001G127700 Sobic006G172700 Sobic006G172700 Sobic001G379100--Sobic006G172700 Sobic002G225000 Sobic002G225000 Sobic001G379100--Sobic002G225000 Sobic004G060700 Sobic004G060700 Sobic001G379100--Sobic004G060700 Sobic004G109000 Sobic004G109000 Sobic001G379100--Sobic004G109000 Sobic001G436300 Sobic001G436300 Sobic002G317600--Sobic001G436300 Sobic002G317600--Sobic008G075200 Sobic008G059900 Sobic008G059900 Sobic002G317600--Sobic008G059900 Sobic007G079600 Sobic007G079600 Sobic002G317600--Sobic007G079600 Sobic007G172600 Sobic007G172600 Sobic002G317600--Sobic007G172600 Sobic003G248300 Sobic003G248300 Sobic002G317600--Sobic003G248300 Sobic001G235700 Sobic001G235700 Sobic002G317600--Sobic001G235700 Sobic002G317600--Sobic008G181400 Sobic001G176900 Sobic001G176900 Sobic002G317600--Sobic001G176900 Sobic008G123600 Sobic008G123600 Sobic006G084500--Sobic008G123600 Sobic002G020100 Sobic002G020100 Sobic006G084500--Sobic002G020100 Sobic001G003600 Sobic001G003600 Sobic006G084500--Sobic001G003600 Sobic006G084500--Sobic006G172700 Sobic001G069500 Sobic001G069500 Sobic006G084500--Sobic001G069500 Sobic004G076000 Sobic004G076000 Sobic006G084500--Sobic004G076000 Sobic007G090424 Sobic007G090424 Sobic006G084500--Sobic007G090424 Sobic005G056201 Sobic005G056201 Sobic006G084500--Sobic005G056201 Sobic009G059100 Sobic009G059100 Sobic006G084500--Sobic009G059100 Sobic007G026200--Sobic001G069500 Sobic007G026200--Sobic007G211100 Sobic001G188600 Sobic001G188600 Sobic007G026200--Sobic001G188600 Sobic007G026200--Sobic004G109000 Sobic002G189600 Sobic002G189600 Sobic007G026200--Sobic002G189600 Sobic006G281066 Sobic006G281066 Sobic007G026200--Sobic006G281066 Sobic010G012900 Sobic010G012900 Sobic007G026200--Sobic010G012900 Sobic001G357200 Sobic001G357200 Sobic007G026200--Sobic001G357200 Sobic004G296800 Sobic004G296800 Sobic007G026200--Sobic004G296800 Sobic002G078000 Sobic002G078000 Sobic003G333700--Sobic002G078000 Sobic003G333700--Sobic003G223000 Sobic001G013900 Sobic001G013900 Sobic003G333700--Sobic001G013900 Sobic003G333700--Sobic001G104300 Sobic003G333700--Sobic004G109000 Sobic003G333700--Sobic001G164500 Sobic001G165801 Sobic001G165801 Sobic003G333700--Sobic001G165801 Sobic003G333700--Sobic001G188600 Sobic003G333700--Sobic001G379100
Octagon: transcription factors


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