Gene annotation
Transcriptome id Sobic.006G084500.1,Sobic.006G084500.2
Synonym Sb06g017090
Functional annotation expressed protein
UniProt A0A1Z5RE04 , C5Y8Q2
Pfam PF01789
Panther DB PTHR31407 PTHR31407:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT2G28605 : Photosystem II reaction center PsbP family protein
RAP-DB (Rice) LOC_Os04g35530.1 : expressed protein
MaizeGDB (Corn) Zm00025a056088
Brachypodium -
Barley -
Wheat TraesCS2B02G322500 , TraesCS2B02G322500 , TraesCS2D02G304200 , TraesCS2A02G305800
Populus -


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cDNA sequences
Sobic.006G084500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
2 Sobic.002G020100 chalcone synthase, putative, expressed -
3 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.006G172700 LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
6 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
7 Sobic.007G090424 - K01061: carboxymethylenebutenolidase
8 Sobic.005G056201 - -
9 Sobic.009G059100 Cupin domain containing protein, expressed -
10 Sobic.005G200600 dirigent, putative, expressed -
11 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
12 Sobic.003G157500 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
13 Sobic.009G180800 aminotransferase, putative, expressed K01845: glutamate-1-semialdehyde 2,1-aminomutase
14 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
15 Sobic.002G415400 - -
16 Sobic.001G435600 - -
17 Sobic.002G415300 - -
18 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
19 Sobic.001G127700 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
20 Sobic.006G025700 - -


Gene co-expression network
sample Sobic006G084500 Sobic006G084500 Sobic008G123600 Sobic008G123600 Sobic006G084500--Sobic008G123600 Sobic002G020100 Sobic002G020100 Sobic006G084500--Sobic002G020100 Sobic001G003600 Sobic001G003600 Sobic006G084500--Sobic001G003600 Sobic006G172700 Sobic006G172700 Sobic006G084500--Sobic006G172700 Sobic001G069500 Sobic001G069500 Sobic006G084500--Sobic001G069500 Sobic004G076000 Sobic004G076000 Sobic006G084500--Sobic004G076000 Sobic007G090424 Sobic007G090424 Sobic006G084500--Sobic007G090424 Sobic005G056201 Sobic005G056201 Sobic006G084500--Sobic005G056201 Sobic009G059100 Sobic009G059100 Sobic006G084500--Sobic009G059100 Sobic008G123600--Sobic004G076000 Sobic003G383600 Sobic003G383600 Sobic008G123600--Sobic003G383600 Sobic008G123600--Sobic001G003600 Sobic001G323801 Sobic001G323801 Sobic008G123600--Sobic001G323801 Sobic008G123600--Sobic001G069500 Sobic001G435600 Sobic001G435600 Sobic008G123600--Sobic001G435600 Sobic009G115050 Sobic009G115050 Sobic008G123600--Sobic009G115050 Sobic003G295800 Sobic003G295800 Sobic008G123600--Sobic003G295800 Sobic008G123600--Sobic006G172700 Sobic002G020100--Sobic001G003600 Sobic002G020100--Sobic006G172700 Sobic002G020100--Sobic005G056201 Sobic002G020100--Sobic004G076000 Sobic002G020100--Sobic009G115050 Sobic002G020100--Sobic009G059100 Sobic002G329500 Sobic002G329500 Sobic002G020100--Sobic002G329500 Sobic009G098100 Sobic009G098100 Sobic002G020100--Sobic009G098100 Sobic002G020100--Sobic001G435600 Sobic001G003600--Sobic006G172700 Sobic001G003600--Sobic002G020100 Sobic001G003600--Sobic009G115050 Sobic003G096100 Sobic003G096100 Sobic001G003600--Sobic003G096100 Sobic001G003600--Sobic004G076000 Sobic001G003600--Sobic001G435600 Sobic001G003600--Sobic002G329500 Sobic003G058600 Sobic003G058600 Sobic001G003600--Sobic003G058600 Sobic005G110436 Sobic005G110436 Sobic001G003600--Sobic005G110436 Sobic006G172700--Sobic001G003600 Sobic006G172700--Sobic009G059100 Sobic006G172700--Sobic002G020100 Sobic001G127700 Sobic001G127700 Sobic006G172700--Sobic001G127700 Sobic006G172700--Sobic005G056201 Sobic006G172700--Sobic004G076000 Sobic006G172700--Sobic009G115050 Sobic004G060700 Sobic004G060700 Sobic006G172700--Sobic004G060700 Sobic006G172700--Sobic003G096100 Sobic001G069500--Sobic009G098100 Sobic001G188600 Sobic001G188600 Sobic001G069500--Sobic001G188600 Sobic007G211100 Sobic007G211100 Sobic001G069500--Sobic007G211100 Sobic001G069500--Sobic003G295800 Sobic001G069500--Sobic003G383600 Sobic001G069500--Sobic008G123600 Sobic009G001500 Sobic009G001500 Sobic001G069500--Sobic009G001500 Sobic008G030000 Sobic008G030000 Sobic001G069500--Sobic008G030000 Sobic007G013400 Sobic007G013400 Sobic001G069500--Sobic007G013400 Sobic004G076000--Sobic001G323801 Sobic004G076000--Sobic009G115050 Sobic004G076000--Sobic001G003600 Sobic004G076000--Sobic008G123600 Sobic001G017000 Sobic001G017000 Sobic004G076000--Sobic001G017000 Sobic004G076000--Sobic002G020100 Sobic004G076000--Sobic005G110436 Sobic004G076000--Sobic006G172700 Sobic004G076000--Sobic003G295800 Sobic007G090424--Sobic001G127700 Sobic007G090424--Sobic006G084500 Sobic007G090424--Sobic006G172700 Sobic007G090424--Sobic008G123600 Sobic003G006100 Sobic003G006100 Sobic007G090424--Sobic003G006100 Sobic007G090424--Sobic005G056201 Sobic007G009600 Sobic007G009600 Sobic007G090424--Sobic007G009600 Sobic007G090424--Sobic001G003600 Sobic007G090424--Sobic004G060700 Sobic005G056201--Sobic006G172700 Sobic005G056201--Sobic002G020100 Sobic005G056201--Sobic001G003600 Sobic005G056201--Sobic009G059100 Sobic005G056201--Sobic004G076000 Sobic003G157500 Sobic003G157500 Sobic005G056201--Sobic003G157500 Sobic005G056201--Sobic003G096100 Sobic005G020200 Sobic005G020200 Sobic005G056201--Sobic005G020200 Sobic006G025700 Sobic006G025700 Sobic005G056201--Sobic006G025700 Sobic009G059100--Sobic006G172700 Sobic009G059100--Sobic003G157500 Sobic009G059100--Sobic006G025700 Sobic009G059100--Sobic001G003600 Sobic009G059100--Sobic002G020100 Sobic005G200600 Sobic005G200600 Sobic009G059100--Sobic005G200600 Sobic009G059100--Sobic005G056201 Sobic009G059100--Sobic003G096100 Sobic009G059100--Sobic001G435600
Octagon: transcription factors


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