Gene annotation
Transcriptome id Sobic.008G075200.1
Synonym Sb08g006770, AtkdsA1
Functional annotation 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
UniProt A0A1B6PC64
Pfam PF00793
Panther DB PTHR21057 PTHR21057:SF2
NCBI CDD -
KEGG Orthology K01627; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)
Gene Ontology GO:0009058; biosynthetic process GO:00086763-deoxy-8-phosphooctulonate synthase activity GO:0008152metabolic process GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT1G79500 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os12g10784.1 : 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
MaizeGDB (Corn) Zm00025a025632
Brachypodium KQJ91850
Barley HORVU2Hr1G016840.12 , HORVU2Hr1G016840.11 , HORVU2Hr1G016840.10 , HORVU2Hr1G016840.9 , HORVU2Hr1G016840.8 , HORVU2Hr1G016840.7 , HORVU2Hr1G016840.6 , HORVU2Hr1G016840.5 , HORVU2Hr1G016840.4 , HORVU2Hr1G016840.3 , HORVU2Hr1G016840.2 , HORVU2Hr1G016840.1
Wheat TraesCS2A02G098500 , TraesCS2D02G098000 , TraesCS2A02G098500 , TraesCS2A02G098500 , TraesCS2B02G114700 , TraesCS2B02G114700 , TraesCS2D02G098000
Populus -


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cDNA sequences
Sobic.008G075200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G319800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chaperonin, putative, expressed K04078: groES, chaperonin GroES
2 Sobic.004G047400 uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547, putative, expressed K06041: kdsD, arabinose-5-phosphate isomerase
3 Sobic.002G317600 endoribonuclease, putative, expressed -
4 Sobic.008G181400 Fatty acid hydroxylase 1 FAH1 (Os)(PubMedID : 27208977)@fatty acid hydroxylase, putative, expressed -
5 Sobic.003G223100 polygalacturonase, putative, expressed -
6 Sobic.009G151100 serine/threonine-protein kinase, putative, expressed -
7 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
8 Sobic.009G002900 expressed protein -
9 Sobic.004G253500 auxin-independent growth promoter protein, putative, expressed -
10 Sobic.003G148400 Pectinesterase 1 (Precursor)(PubMedID : 26186930)@pectinesterase, putative, expressed K01051: pectinesterase
11 Sobic.001G389600 expressed protein -
12 Sobic.003G078300 leucine-rich repeat protein-related, putative, expressed -
13 Sobic.002G403000 eukaryotic aspartyl protease domain containing protein, expressed -
14 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
15 Sobic.003G047900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@boron transporter protein, putative, expressed -
16 Sobic.002G347400 expressed protein -
17 Sobic.008G066700 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
19 Sobic.010G165100 expressed protein -
20 Sobic.008G059900 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)


Gene co-expression network
sample Sobic008G075200 Sobic008G075200 Sobic004G319800 Sobic004G319800 Sobic008G075200--Sobic004G319800 Sobic004G047400 Sobic004G047400 Sobic008G075200--Sobic004G047400 Sobic002G317600 Sobic002G317600 Sobic008G075200--Sobic002G317600 Sobic008G181400 Sobic008G181400 Sobic008G075200--Sobic008G181400 Sobic003G223100 Sobic003G223100 Sobic008G075200--Sobic003G223100 Sobic009G151100 Sobic009G151100 Sobic008G075200--Sobic009G151100 Sobic009G231100 Sobic009G231100 Sobic008G075200--Sobic009G231100 Sobic009G002900 Sobic009G002900 Sobic008G075200--Sobic009G002900 Sobic004G253500 Sobic004G253500 Sobic008G075200--Sobic004G253500 Sobic004G319800--Sobic008G181400 Sobic004G319800--Sobic008G075200 Sobic007G166600 Sobic007G166600 Sobic004G319800--Sobic007G166600 Sobic004G319800--Sobic009G002900 Sobic001G379100 Sobic001G379100 Sobic004G319800--Sobic001G379100 Sobic004G319800--Sobic002G317600 Sobic006G084500 Sobic006G084500 Sobic004G319800--Sobic006G084500 Sobic007G026200 Sobic007G026200 Sobic004G319800--Sobic007G026200 Sobic003G333700 Sobic003G333700 Sobic004G319800--Sobic003G333700 Sobic004G047400--Sobic008G075200 Sobic004G263000 Sobic004G263000 Sobic004G047400--Sobic004G263000 Sobic004G047400--Sobic004G319800 Sobic008G066700 Sobic008G066700 Sobic004G047400--Sobic008G066700 Sobic009G102100 Sobic009G102100 Sobic004G047400--Sobic009G102100 Sobic004G047400--Sobic008G181400 Sobic003G108000 Sobic003G108000 Sobic004G047400--Sobic003G108000 Sobic002G033000 Sobic002G033000 Sobic004G047400--Sobic002G033000 Sobic002G314800 Sobic002G314800 Sobic004G047400--Sobic002G314800 Sobic001G436300 Sobic001G436300 Sobic002G317600--Sobic001G436300 Sobic002G317600--Sobic008G075200 Sobic008G059900 Sobic008G059900 Sobic002G317600--Sobic008G059900 Sobic007G079600 Sobic007G079600 Sobic002G317600--Sobic007G079600 Sobic007G172600 Sobic007G172600 Sobic002G317600--Sobic007G172600 Sobic003G248300 Sobic003G248300 Sobic002G317600--Sobic003G248300 Sobic001G235700 Sobic001G235700 Sobic002G317600--Sobic001G235700 Sobic002G317600--Sobic008G181400 Sobic001G176900 Sobic001G176900 Sobic002G317600--Sobic001G176900 Sobic008G181400--Sobic004G319800 Sobic008G181400--Sobic008G075200 Sobic008G181400--Sobic009G002900 Sobic008G181400--Sobic008G066700 Sobic008G181400--Sobic002G317600 Sobic009G055900 Sobic009G055900 Sobic008G181400--Sobic009G055900 Sobic008G181400--Sobic003G223100 Sobic003G261200 Sobic003G261200 Sobic008G181400--Sobic003G261200 Sobic008G143600 Sobic008G143600 Sobic008G181400--Sobic008G143600 Sobic003G223100--Sobic008G075200 Sobic002G377300 Sobic002G377300 Sobic003G223100--Sobic002G377300 Sobic001G047200 Sobic001G047200 Sobic003G223100--Sobic001G047200 Sobic003G223100--Sobic009G055900 Sobic003G223100--Sobic008G181400 Sobic003G223100--Sobic004G319800 Sobic003G291000 Sobic003G291000 Sobic003G223100--Sobic003G291000 Sobic003G030700 Sobic003G030700 Sobic003G223100--Sobic003G030700 Sobic003G148400 Sobic003G148400 Sobic003G223100--Sobic003G148400 Sobic003G365800 Sobic003G365800 Sobic009G151100--Sobic003G365800 Sobic010G156100 Sobic010G156100 Sobic009G151100--Sobic010G156100 Sobic003G283400 Sobic003G283400 Sobic009G151100--Sobic003G283400 Sobic003G308100 Sobic003G308100 Sobic009G151100--Sobic003G308100 Sobic009G216300 Sobic009G216300 Sobic009G151100--Sobic009G216300 Sobic002G428000 Sobic002G428000 Sobic009G151100--Sobic002G428000 Sobic004G000700 Sobic004G000700 Sobic009G151100--Sobic004G000700 Sobic003G078300 Sobic003G078300 Sobic009G151100--Sobic003G078300 Sobic009G151100--Sobic008G075200 Sobic009G201900 Sobic009G201900 Sobic009G231100--Sobic009G201900 Sobic002G225000 Sobic002G225000 Sobic009G231100--Sobic002G225000 Sobic009G231100--Sobic002G377300 Sobic001G518200 Sobic001G518200 Sobic009G231100--Sobic001G518200 Sobic003G420900 Sobic003G420900 Sobic009G231100--Sobic003G420900 Sobic003G223000 Sobic003G223000 Sobic009G231100--Sobic003G223000 Sobic005G031000 Sobic005G031000 Sobic009G231100--Sobic005G031000 Sobic001G104300 Sobic001G104300 Sobic009G231100--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic009G231100--Sobic005G022000 Sobic003G250000 Sobic003G250000 Sobic009G002900--Sobic003G250000 Sobic009G002900--Sobic003G078300 Sobic009G002900--Sobic004G253500 Sobic009G177200 Sobic009G177200 Sobic009G002900--Sobic009G177200 Sobic009G002900--Sobic003G223000 Sobic001G461800 Sobic001G461800 Sobic009G002900--Sobic001G461800 Sobic008G113300 Sobic008G113300 Sobic009G002900--Sobic008G113300 Sobic006G093200 Sobic006G093200 Sobic009G002900--Sobic006G093200 Sobic001G199500 Sobic001G199500 Sobic009G002900--Sobic001G199500 Sobic004G253500--Sobic003G078300 Sobic004G253500--Sobic001G461800 Sobic004G253500--Sobic003G250000 Sobic003G259500 Sobic003G259500 Sobic004G253500--Sobic003G259500 Sobic004G253500--Sobic008G059900 Sobic003G024000 Sobic003G024000 Sobic004G253500--Sobic003G024000 Sobic004G253500--Sobic009G002900 Sobic004G253500--Sobic001G199500 Sobic003G102700 Sobic003G102700 Sobic004G253500--Sobic003G102700
Octagon: transcription factors


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