Gene annotation
Transcriptome id Sobic.002G317600.2,Sobic.002G317600.1
Synonym Sb02g034670
Functional annotation endoribonuclease, putative, expressed
UniProt A0A1B6QEI0 , A0A1B6QEJ3
Pfam PF01042
Panther DB PTHR11803 PTHR11803:SF13
NCBI CDD KOG2317; Putative translation initiation inhibitor UK114/IBM1
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G20390 : endoribonuclease L-PSP family protein
RAP-DB (Rice) LOC_Os07g33240.1 : endoribonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a048215
Brachypodium KQK16000 , PNT75016
Barley HORVU2Hr1G046530.4 , HORVU2Hr1G046530.2 , HORVU2Hr1G046530.3 , HORVU2Hr1G046530.1
Wheat TraesCS2A02G222600 , TraesCS2B02G248100 , TraesCS2D02G228600
Populus -


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cDNA sequences
Sobic.002G317600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
2 Sobic.008G075200 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed K01627: 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)
3 Sobic.008G059900 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
4 Sobic.007G079600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
5 Sobic.007G172600 dihydroneopterin aldolase, putative, expressed K01633: 7,8-dihydroneopterin aldolase/epimerase/oxygenase
6 Sobic.003G248300 kinase, pfkB family, putative, expressed K00852: rbsK, ribokinase
7 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
8 Sobic.008G181400 Fatty acid hydroxylase 1 FAH1 (Os)(PubMedID : 27208977)@fatty acid hydroxylase, putative, expressed -
9 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.004G319800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chaperonin, putative, expressed K04078: groES, chaperonin GroES
11 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
12 Sobic.001G465500 radical SAM enzyme, putative, expressed -
13 Sobic.009G057200 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
14 Sobic.009G201900 peptidyl-tRNA hydrolase, putative, expressed K04794: peptidyl-tRNA hydrolase, PTH2 family
15 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
16 Sobic.009G102100 DUF538 domain containing protein, putative, expressed -
17 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
18 Sobic.008G135701 - -
19 Sobic.007G167800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroxy-acid dehydratase, putative, expressed K01687: dihydroxy-acid dehydratase
20 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1


Gene co-expression network
sample Sobic002G317600 Sobic002G317600 Sobic001G436300 Sobic001G436300 Sobic002G317600--Sobic001G436300 Sobic008G075200 Sobic008G075200 Sobic002G317600--Sobic008G075200 Sobic008G059900 Sobic008G059900 Sobic002G317600--Sobic008G059900 Sobic007G079600 Sobic007G079600 Sobic002G317600--Sobic007G079600 Sobic007G172600 Sobic007G172600 Sobic002G317600--Sobic007G172600 Sobic003G248300 Sobic003G248300 Sobic002G317600--Sobic003G248300 Sobic001G235700 Sobic001G235700 Sobic002G317600--Sobic001G235700 Sobic008G181400 Sobic008G181400 Sobic002G317600--Sobic008G181400 Sobic001G176900 Sobic001G176900 Sobic002G317600--Sobic001G176900 Sobic006G127500 Sobic006G127500 Sobic001G436300--Sobic006G127500 Sobic001G436300--Sobic001G235700 Sobic001G115500 Sobic001G115500 Sobic001G436300--Sobic001G115500 Sobic003G274400 Sobic003G274400 Sobic001G436300--Sobic003G274400 Sobic001G008500 Sobic001G008500 Sobic001G436300--Sobic001G008500 Sobic006G245700 Sobic006G245700 Sobic001G436300--Sobic006G245700 Sobic004G343600 Sobic004G343600 Sobic001G436300--Sobic004G343600 Sobic001G436300--Sobic002G317600 Sobic001G097400 Sobic001G097400 Sobic001G436300--Sobic001G097400 Sobic004G319800 Sobic004G319800 Sobic008G075200--Sobic004G319800 Sobic004G047400 Sobic004G047400 Sobic008G075200--Sobic004G047400 Sobic008G075200--Sobic002G317600 Sobic008G075200--Sobic008G181400 Sobic003G223100 Sobic003G223100 Sobic008G075200--Sobic003G223100 Sobic009G151100 Sobic009G151100 Sobic008G075200--Sobic009G151100 Sobic009G231100 Sobic009G231100 Sobic008G075200--Sobic009G231100 Sobic009G002900 Sobic009G002900 Sobic008G075200--Sobic009G002900 Sobic004G253500 Sobic004G253500 Sobic008G075200--Sobic004G253500 Sobic010G197200 Sobic010G197200 Sobic008G059900--Sobic010G197200 Sobic005G031000 Sobic005G031000 Sobic008G059900--Sobic005G031000 Sobic001G199500 Sobic001G199500 Sobic008G059900--Sobic001G199500 Sobic008G059900--Sobic004G253500 Sobic010G073500 Sobic010G073500 Sobic008G059900--Sobic010G073500 Sobic003G102700 Sobic003G102700 Sobic008G059900--Sobic003G102700 Sobic006G071628 Sobic006G071628 Sobic008G059900--Sobic006G071628 Sobic006G237000 Sobic006G237000 Sobic008G059900--Sobic006G237000 Sobic003G392100 Sobic003G392100 Sobic008G059900--Sobic003G392100 Sobic004G355500 Sobic004G355500 Sobic007G079600--Sobic004G355500 Sobic010G103700 Sobic010G103700 Sobic007G079600--Sobic010G103700 Sobic009G088200 Sobic009G088200 Sobic007G079600--Sobic009G088200 Sobic007G112100 Sobic007G112100 Sobic007G079600--Sobic007G112100 Sobic006G051000 Sobic006G051000 Sobic007G079600--Sobic006G051000 Sobic003G179500 Sobic003G179500 Sobic007G079600--Sobic003G179500 Sobic001G103000 Sobic001G103000 Sobic007G079600--Sobic001G103000 Sobic003G183700 Sobic003G183700 Sobic007G079600--Sobic003G183700 Sobic007G139500 Sobic007G139500 Sobic007G079600--Sobic007G139500 Sobic007G172600--Sobic001G115500 Sobic008G125100 Sobic008G125100 Sobic007G172600--Sobic008G125100 Sobic001G471600 Sobic001G471600 Sobic007G172600--Sobic001G471600 Sobic008G135701 Sobic008G135701 Sobic007G172600--Sobic008G135701 Sobic007G172600--Sobic002G317600 Sobic008G083400 Sobic008G083400 Sobic007G172600--Sobic008G083400 Sobic009G122900 Sobic009G122900 Sobic007G172600--Sobic009G122900 Sobic004G067400 Sobic004G067400 Sobic007G172600--Sobic004G067400 Sobic001G469200 Sobic001G469200 Sobic007G172600--Sobic001G469200 Sobic003G170300 Sobic003G170300 Sobic003G248300--Sobic003G170300 Sobic003G248300--Sobic002G317600 Sobic003G286200 Sobic003G286200 Sobic003G248300--Sobic003G286200 Sobic005G110526 Sobic005G110526 Sobic003G248300--Sobic005G110526 Sobic006G129900 Sobic006G129900 Sobic003G248300--Sobic006G129900 Sobic001G473400 Sobic001G473400 Sobic003G248300--Sobic001G473400 Sobic006G038200 Sobic006G038200 Sobic003G248300--Sobic006G038200 Sobic007G043600 Sobic007G043600 Sobic003G248300--Sobic007G043600 Sobic010G258000 Sobic010G258000 Sobic003G248300--Sobic010G258000 Sobic001G235700--Sobic001G097400 Sobic001G235700--Sobic001G436300 Sobic004G208100 Sobic004G208100 Sobic001G235700--Sobic004G208100 Sobic004G190600 Sobic004G190600 Sobic001G235700--Sobic004G190600 Sobic001G440900 Sobic001G440900 Sobic001G235700--Sobic001G440900 Sobic002G303800 Sobic002G303800 Sobic001G235700--Sobic002G303800 Sobic002G133000 Sobic002G133000 Sobic001G235700--Sobic002G133000 Sobic001G235700--Sobic004G343600 Sobic001G235700--Sobic006G127500 Sobic008G181400--Sobic004G319800 Sobic008G181400--Sobic008G075200 Sobic008G181400--Sobic009G002900 Sobic008G066700 Sobic008G066700 Sobic008G181400--Sobic008G066700 Sobic008G181400--Sobic002G317600 Sobic009G055900 Sobic009G055900 Sobic008G181400--Sobic009G055900 Sobic008G181400--Sobic003G223100 Sobic003G261200 Sobic003G261200 Sobic008G181400--Sobic003G261200 Sobic008G143600 Sobic008G143600 Sobic008G181400--Sobic008G143600 Sobic010G134100 Sobic010G134100 Sobic001G176900--Sobic010G134100 Sobic004G356300 Sobic004G356300 Sobic001G176900--Sobic004G356300 Sobic001G413100 Sobic001G413100 Sobic001G176900--Sobic001G413100 Sobic001G167500 Sobic001G167500 Sobic001G176900--Sobic001G167500 Sobic002G367800 Sobic002G367800 Sobic001G176900--Sobic002G367800 Sobic003G388700 Sobic003G388700 Sobic001G176900--Sobic003G388700 Sobic004G184000 Sobic004G184000 Sobic001G176900--Sobic004G184000 Sobic004G007700 Sobic004G007700 Sobic001G176900--Sobic004G007700 Sobic003G075200 Sobic003G075200 Sobic001G176900--Sobic003G075200
Octagon: transcription factors


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