Gene annotation
Transcriptome id Sobic.009G231100.1
Synonym KDSB, Sb09g028380
Functional annotation 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed
UniProt C5YVI6
Pfam PF12804
Panther DB PTHR21485 PTHR21485:SF19
NCBI CDD -
KEGG Orthology K00979; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53000 : Nucleotide-diphospho-sugar transferases superfamily protein
RAP-DB (Rice) LOC_Os05g48750.1 : 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a036594
Brachypodium KQK04905
Barley HORVU1Hr1G086980.4 , HORVU1Hr1G086980.5 , HORVU1Hr1G086980.6 , HORVU1Hr1G086980.7 , HORVU1Hr1G086980.1 , HORVU1Hr1G086980.2 , HORVU1Hr1G086980.3 , HORVU1Hr1G086980.8 , HORVU1Hr1G086980.9 , HORVU1Hr1G086980.21 , HORVU1Hr1G086980.20 , HORVU1Hr1G086980.16 , HORVU1Hr1G086980.17 , HORVU1Hr1G086980.14 , HORVU1Hr1G086980.15 , HORVU1Hr1G086980.12 , HORVU1Hr1G086980.13 , HORVU1Hr1G086980.10 , HORVU1Hr1G086980.11 , HORVU1Hr1G086980.18 , HORVU1Hr1G086980.19
Wheat TraesCS1B02G422200 , TraesCS1A02G394500 , TraesCS1D02G401900
Populus -


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cDNA sequences
Sobic.009G231100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G201900 peptidyl-tRNA hydrolase, putative, expressed K04794: peptidyl-tRNA hydrolase, PTH2 family
2 Sobic.002G225000 remorin C-terminal domain containing protein, putative, expressed -
3 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
4 Sobic.001G518200 - K06928: nucleoside-triphosphatase
5 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
6 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
8 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
9 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
10 Sobic.008G075200 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed K01627: 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)
11 Sobic.001G371700 zinc finger protein, putative, expressed -
12 Sobic.002G388600 pectinacetylesterase domain containing protein, expressed -
13 Sobic.002G317600 endoribonuclease, putative, expressed -
14 Sobic.008G059900 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
15 Sobic.002G078000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KHG/KDPG aldolase, putative, expressed -
16 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
17 Sobic.010G134500 exonuclease, putative, expressed -
18 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
19 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
20 Sobic.007G203000 RNA pseudouridine synthase, putative, expressed -


Gene co-expression network
sample Sobic009G231100 Sobic009G231100 Sobic009G201900 Sobic009G201900 Sobic009G231100--Sobic009G201900 Sobic002G225000 Sobic002G225000 Sobic009G231100--Sobic002G225000 Sobic002G377300 Sobic002G377300 Sobic009G231100--Sobic002G377300 Sobic001G518200 Sobic001G518200 Sobic009G231100--Sobic001G518200 Sobic003G420900 Sobic003G420900 Sobic009G231100--Sobic003G420900 Sobic003G223000 Sobic003G223000 Sobic009G231100--Sobic003G223000 Sobic005G031000 Sobic005G031000 Sobic009G231100--Sobic005G031000 Sobic001G104300 Sobic001G104300 Sobic009G231100--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic009G231100--Sobic005G022000 Sobic009G201900--Sobic009G231100 Sobic009G201900--Sobic003G420900 Sobic002G078000 Sobic002G078000 Sobic009G201900--Sobic002G078000 Sobic004G070800 Sobic004G070800 Sobic009G201900--Sobic004G070800 Sobic010G134500 Sobic010G134500 Sobic009G201900--Sobic010G134500 Sobic009G201900--Sobic005G022000 Sobic002G317600 Sobic002G317600 Sobic009G201900--Sobic002G317600 Sobic009G201900--Sobic003G223000 Sobic007G026200 Sobic007G026200 Sobic009G201900--Sobic007G026200 Sobic002G225000--Sobic009G231100 Sobic003G078300 Sobic003G078300 Sobic002G225000--Sobic003G078300 Sobic002G225000--Sobic002G377300 Sobic001G379100 Sobic001G379100 Sobic002G225000--Sobic001G379100 Sobic010G165100 Sobic010G165100 Sobic002G225000--Sobic010G165100 Sobic003G148400 Sobic003G148400 Sobic002G225000--Sobic003G148400 Sobic002G225000--Sobic003G223000 Sobic002G388600 Sobic002G388600 Sobic002G225000--Sobic002G388600 Sobic002G225000--Sobic002G078000 Sobic009G055900 Sobic009G055900 Sobic002G377300--Sobic009G055900 Sobic001G371700 Sobic001G371700 Sobic002G377300--Sobic001G371700 Sobic002G377300--Sobic010G165100 Sobic002G142500 Sobic002G142500 Sobic002G377300--Sobic002G142500 Sobic002G377300--Sobic009G231100 Sobic001G047200 Sobic001G047200 Sobic002G377300--Sobic001G047200 Sobic008G143600 Sobic008G143600 Sobic002G377300--Sobic008G143600 Sobic002G377300--Sobic002G225000 Sobic002G246000 Sobic002G246000 Sobic002G377300--Sobic002G246000 Sobic001G518200--Sobic009G231100 Sobic002G072300 Sobic002G072300 Sobic001G518200--Sobic002G072300 Sobic009G063800 Sobic009G063800 Sobic001G518200--Sobic009G063800 Sobic001G518600 Sobic001G518600 Sobic001G518200--Sobic001G518600 Sobic003G202100 Sobic003G202100 Sobic001G518200--Sobic003G202100 Sobic001G309200 Sobic001G309200 Sobic001G518200--Sobic001G309200 Sobic003G085500 Sobic003G085500 Sobic001G518200--Sobic003G085500 Sobic010G153400 Sobic010G153400 Sobic001G518200--Sobic010G153400 Sobic003G047900 Sobic003G047900 Sobic001G518200--Sobic003G047900 Sobic001G376700 Sobic001G376700 Sobic003G420900--Sobic001G376700 Sobic004G296800 Sobic004G296800 Sobic003G420900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic003G420900--Sobic003G165800 Sobic003G420900--Sobic009G231100 Sobic002G333100 Sobic002G333100 Sobic003G420900--Sobic002G333100 Sobic004G275600 Sobic004G275600 Sobic003G420900--Sobic004G275600 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic001G543700 Sobic001G543700 Sobic003G420900--Sobic001G543700 Sobic003G333700 Sobic003G333700 Sobic003G223000--Sobic003G333700 Sobic003G223000--Sobic002G078000 Sobic008G101900 Sobic008G101900 Sobic003G223000--Sobic008G101900 Sobic009G002900 Sobic009G002900 Sobic003G223000--Sobic009G002900 Sobic009G177200 Sobic009G177200 Sobic003G223000--Sobic009G177200 Sobic003G223000--Sobic009G231100 Sobic001G165801 Sobic001G165801 Sobic003G223000--Sobic001G165801 Sobic003G223000--Sobic001G104300 Sobic002G272400 Sobic002G272400 Sobic003G223000--Sobic002G272400 Sobic004G356200 Sobic004G356200 Sobic005G031000--Sobic004G356200 Sobic001G200200 Sobic001G200200 Sobic005G031000--Sobic001G200200 Sobic008G059900 Sobic008G059900 Sobic005G031000--Sobic008G059900 Sobic002G125800 Sobic002G125800 Sobic005G031000--Sobic002G125800 Sobic001G434700 Sobic001G434700 Sobic005G031000--Sobic001G434700 Sobic006G237000 Sobic006G237000 Sobic005G031000--Sobic006G237000 Sobic001G533100 Sobic001G533100 Sobic005G031000--Sobic001G533100 Sobic004G037200 Sobic004G037200 Sobic005G031000--Sobic004G037200 Sobic010G155600 Sobic010G155600 Sobic005G031000--Sobic010G155600 Sobic001G104300--Sobic002G078000 Sobic006G281066 Sobic006G281066 Sobic001G104300--Sobic006G281066 Sobic001G104300--Sobic005G022000 Sobic001G104300--Sobic003G165800 Sobic001G104300--Sobic004G070800 Sobic001G013900 Sobic001G013900 Sobic001G104300--Sobic001G013900 Sobic001G104300--Sobic003G333700 Sobic001G104300--Sobic010G134500 Sobic004G109000 Sobic004G109000 Sobic001G104300--Sobic004G109000 Sobic005G022000--Sobic002G078000 Sobic005G022000--Sobic001G104300 Sobic002G363500 Sobic002G363500 Sobic005G022000--Sobic002G363500 Sobic005G022000--Sobic006G281066 Sobic006G114300 Sobic006G114300 Sobic005G022000--Sobic006G114300 Sobic005G022000--Sobic007G026200 Sobic002G360200 Sobic002G360200 Sobic005G022000--Sobic002G360200 Sobic007G166600 Sobic007G166600 Sobic005G022000--Sobic007G166600 Sobic001G389500 Sobic001G389500 Sobic005G022000--Sobic001G389500
Octagon: transcription factors


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