Gene annotation
Transcriptome id Sobic.007G203000.1
Synonym Sb07g027030
Functional annotation RNA pseudouridine synthase, putative, expressed
UniProt A0A1B6PIX0
Pfam PF00849
Panther DB PTHR11079 PTHR11079:SF74
NCBI CDD KOG1919; RNA pseudouridylate synthases
KEGG Orthology -
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT1G78910 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os08g40860.1 : RNA pseudouridine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a030346
Brachypodium KQJ99001
Barley HORVU7Hr1G052060.12 , HORVU7Hr1G052060.13 , HORVU7Hr1G052060.10 , HORVU7Hr1G052060.11 , HORVU7Hr1G052060.16 , HORVU7Hr1G052060.17 , HORVU7Hr1G052060.14 , HORVU7Hr1G052060.8 , HORVU7Hr1G052060.9 , HORVU7Hr1G052060.1 , HORVU7Hr1G052060.6 , HORVU7Hr1G052060.2 , HORVU7Hr1G052060.3 , HORVU7Hr1G052060.4 , HORVU7Hr1G052060.5 , HORVU7Hr1G052060.7
Wheat TraesCS7D02G250500 , TraesCS7A02G252400 , TraesCS7B02G138500
Populus -


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cDNA sequences
Sobic.007G203000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G203500 actin, putative, expressed K18584: ACTR3, actin-related protein 3
2 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
3 Sobic.001G371700 zinc finger protein, putative, expressed -
4 Sobic.001G217200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
5 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
6 Sobic.001G361300 CDPK - calcium/calmodulin dependent serine/threonine protein kinase 1(PubMedID : 31721651)@CAMK_CAMK_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
7 Sobic.010G059200 cystathionine gamma-synthase, putative, expressed K01760: cysteine-S-conjugate beta-lyase
8 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
9 Sobic.008G125100 Mur ligase family protein, putative, expressed -
10 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
11 Sobic.004G356200 expressed protein -
12 Sobic.010G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
13 Sobic.010G054000 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
14 Sobic.002G225000 remorin C-terminal domain containing protein, putative, expressed -
15 Sobic.001G466900 expressed protein -
16 Sobic.004G118800 receptor lectin kinase like protein, putative, expressed -
17 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
18 Sobic.004G016300 PPR repeat containing protein, expressed -
19 Sobic.007G030800 expressed protein -
20 Sobic.008G011300 GIY-YIG catalytic domain containing protein, putative, expressed K15078: structure-specific endonuclease subunit SLX1


Gene co-expression network
sample Sobic007G203000 Sobic007G203000 Sobic004G203500 Sobic004G203500 Sobic007G203000--Sobic004G203500 Sobic009G231100 Sobic009G231100 Sobic007G203000--Sobic009G231100 Sobic001G371700 Sobic001G371700 Sobic007G203000--Sobic001G371700 Sobic001G217200 Sobic001G217200 Sobic007G203000--Sobic001G217200 Sobic005G031000 Sobic005G031000 Sobic007G203000--Sobic005G031000 Sobic001G361300 Sobic001G361300 Sobic007G203000--Sobic001G361300 Sobic010G059200 Sobic010G059200 Sobic007G203000--Sobic010G059200 Sobic003G165800 Sobic003G165800 Sobic007G203000--Sobic003G165800 Sobic008G125100 Sobic008G125100 Sobic007G203000--Sobic008G125100 Sobic004G295500 Sobic004G295500 Sobic004G203500--Sobic004G295500 Sobic010G054000 Sobic010G054000 Sobic004G203500--Sobic010G054000 Sobic004G203500--Sobic007G203000 Sobic006G183200 Sobic006G183200 Sobic004G203500--Sobic006G183200 Sobic003G205300 Sobic003G205300 Sobic004G203500--Sobic003G205300 Sobic002G388600 Sobic002G388600 Sobic004G203500--Sobic002G388600 Sobic003G240100 Sobic003G240100 Sobic004G203500--Sobic003G240100 Sobic006G193500 Sobic006G193500 Sobic004G203500--Sobic006G193500 Sobic003G410700 Sobic003G410700 Sobic004G203500--Sobic003G410700 Sobic009G201900 Sobic009G201900 Sobic009G231100--Sobic009G201900 Sobic002G225000 Sobic002G225000 Sobic009G231100--Sobic002G225000 Sobic002G377300 Sobic002G377300 Sobic009G231100--Sobic002G377300 Sobic001G518200 Sobic001G518200 Sobic009G231100--Sobic001G518200 Sobic003G420900 Sobic003G420900 Sobic009G231100--Sobic003G420900 Sobic003G223000 Sobic003G223000 Sobic009G231100--Sobic003G223000 Sobic009G231100--Sobic005G031000 Sobic001G104300 Sobic001G104300 Sobic009G231100--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic009G231100--Sobic005G022000 Sobic001G371700--Sobic002G377300 Sobic004G118800 Sobic004G118800 Sobic001G371700--Sobic004G118800 Sobic003G078300 Sobic003G078300 Sobic001G371700--Sobic003G078300 Sobic008G101900 Sobic008G101900 Sobic001G371700--Sobic008G101900 Sobic006G257200 Sobic006G257200 Sobic001G371700--Sobic006G257200 Sobic001G047200 Sobic001G047200 Sobic001G371700--Sobic001G047200 Sobic002G272400 Sobic002G272400 Sobic001G371700--Sobic002G272400 Sobic002G311000 Sobic002G311000 Sobic001G371700--Sobic002G311000 Sobic001G371700--Sobic003G223000 Sobic006G063001 Sobic006G063001 Sobic001G217200--Sobic006G063001 Sobic001G217200--Sobic001G371700 Sobic001G217200--Sobic007G203000 Sobic001G217200--Sobic002G377300 Sobic004G178400 Sobic004G178400 Sobic001G217200--Sobic004G178400 Sobic009G083300 Sobic009G083300 Sobic001G217200--Sobic009G083300 Sobic004G255800 Sobic004G255800 Sobic001G217200--Sobic004G255800 Sobic001G217200--Sobic002G272400 Sobic003G071600 Sobic003G071600 Sobic001G217200--Sobic003G071600 Sobic004G356200 Sobic004G356200 Sobic005G031000--Sobic004G356200 Sobic001G200200 Sobic001G200200 Sobic005G031000--Sobic001G200200 Sobic008G059900 Sobic008G059900 Sobic005G031000--Sobic008G059900 Sobic002G125800 Sobic002G125800 Sobic005G031000--Sobic002G125800 Sobic001G434700 Sobic001G434700 Sobic005G031000--Sobic001G434700 Sobic006G237000 Sobic006G237000 Sobic005G031000--Sobic006G237000 Sobic001G533100 Sobic001G533100 Sobic005G031000--Sobic001G533100 Sobic004G037200 Sobic004G037200 Sobic005G031000--Sobic004G037200 Sobic010G155600 Sobic010G155600 Sobic005G031000--Sobic010G155600 Sobic007G165900 Sobic007G165900 Sobic001G361300--Sobic007G165900 Sobic004G316700 Sobic004G316700 Sobic001G361300--Sobic004G316700 Sobic006G261400 Sobic006G261400 Sobic001G361300--Sobic006G261400 Sobic006G250300 Sobic006G250300 Sobic001G361300--Sobic006G250300 Sobic001G456300 Sobic001G456300 Sobic001G361300--Sobic001G456300 Sobic010G009800 Sobic010G009800 Sobic001G361300--Sobic010G009800 Sobic004G286500 Sobic004G286500 Sobic001G361300--Sobic004G286500 Sobic003G104000 Sobic003G104000 Sobic001G361300--Sobic003G104000 Sobic001G051700 Sobic001G051700 Sobic001G361300--Sobic001G051700 Sobic009G124000 Sobic009G124000 Sobic010G059200--Sobic009G124000 Sobic010G059200--Sobic003G165800 Sobic004G124100 Sobic004G124100 Sobic010G059200--Sobic004G124100 Sobic010G059200--Sobic003G420900 Sobic010G123300 Sobic010G123300 Sobic010G059200--Sobic010G123300 Sobic002G301200 Sobic002G301200 Sobic010G059200--Sobic002G301200 Sobic004G296800 Sobic004G296800 Sobic010G059200--Sobic004G296800 Sobic001G376700 Sobic001G376700 Sobic010G059200--Sobic001G376700 Sobic001G408800 Sobic001G408800 Sobic010G059200--Sobic001G408800 Sobic003G165800--Sobic001G104300 Sobic002G141900 Sobic002G141900 Sobic003G165800--Sobic002G141900 Sobic003G165800--Sobic003G420900 Sobic001G021500 Sobic001G021500 Sobic003G165800--Sobic001G021500 Sobic001G441200 Sobic001G441200 Sobic003G165800--Sobic001G441200 Sobic006G281066 Sobic006G281066 Sobic003G165800--Sobic006G281066 Sobic003G165800--Sobic005G022000 Sobic009G055900 Sobic009G055900 Sobic003G165800--Sobic009G055900 Sobic002G363500 Sobic002G363500 Sobic003G165800--Sobic002G363500 Sobic009G122900 Sobic009G122900 Sobic008G125100--Sobic009G122900 Sobic001G315400 Sobic001G315400 Sobic008G125100--Sobic001G315400 Sobic007G000400 Sobic007G000400 Sobic008G125100--Sobic007G000400 Sobic004G128200 Sobic004G128200 Sobic008G125100--Sobic004G128200 Sobic001G236800 Sobic001G236800 Sobic008G125100--Sobic001G236800 Sobic003G304800 Sobic003G304800 Sobic008G125100--Sobic003G304800 Sobic007G172600 Sobic007G172600 Sobic008G125100--Sobic007G172600 Sobic008G125100--Sobic004G178400 Sobic002G380100 Sobic002G380100 Sobic008G125100--Sobic002G380100
Octagon: transcription factors


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