Gene annotation
Transcriptome id Sobic.008G125100.1
Synonym Sb08g017730, EMB9, DFA, ATDFA, GLA1
Functional annotation Mur ligase family protein, putative, expressed
UniProt C5YPL9
Pfam PF08245
Panther DB PTHR11136 PTHR11136:SF0
NCBI CDD KOG2525; Folylpolyglutamate synthase
KEGG Orthology -
Gene Ontology GO:0009058; biosynthetic process GO:0005524ATP binding GO:0009396folic acid-containing compound biosynthetic process GO:0004326tetrahydrofolylpolyglutamate synthase activity


Orthologs (automatic annotation)
TAIR AT5G41480 : Folylpolyglutamate synthetase family protein
RAP-DB (Rice) LOC_Os12g42870.1 : Mur ligase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a054312 , Zm00025a025489
Brachypodium -
Barley -
Wheat TraesCS5B02G022900
Populus -


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cDNA sequences
Sobic.008G125100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G122900 alpha 1,3-xylosyltransferase, putative, expressed K11714: rhamnogalacturonan II specific xylosyltransferase
2 Sobic.001G315400 expressed protein -
3 Sobic.007G000400 B3 DNA binding domain containing protein, expressed -
4 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
5 Sobic.001G236800 tRNA methyltransferase, putative, expressed K00927: PGK, phosphoglycerate kinase
6 Sobic.003G304800 OsRhmbd4 - Putative Rhomboid homologue, expressed -
7 Sobic.007G172600 dihydroneopterin aldolase, putative, expressed K01633: 7,8-dihydroneopterin aldolase/epimerase/oxygenase
8 Sobic.004G178400 zinc finger, C3HC4 type domain containing protein, expressed K19039: E3 ubiquitin-protein ligase ATL7/58/59
9 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
10 Sobic.003G077500 expressed protein -
11 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
12 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
13 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
14 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
15 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
16 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
17 Sobic.003G331000 exostosin family domain containing protein, expressed -
18 Sobic.001G371700 zinc finger protein, putative, expressed -
19 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
20 Sobic.009G151800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2


Gene co-expression network
sample Sobic008G125100 Sobic008G125100 Sobic009G122900 Sobic009G122900 Sobic008G125100--Sobic009G122900 Sobic001G315400 Sobic001G315400 Sobic008G125100--Sobic001G315400 Sobic007G000400 Sobic007G000400 Sobic008G125100--Sobic007G000400 Sobic004G128200 Sobic004G128200 Sobic008G125100--Sobic004G128200 Sobic001G236800 Sobic001G236800 Sobic008G125100--Sobic001G236800 Sobic003G304800 Sobic003G304800 Sobic008G125100--Sobic003G304800 Sobic007G172600 Sobic007G172600 Sobic008G125100--Sobic007G172600 Sobic004G178400 Sobic004G178400 Sobic008G125100--Sobic004G178400 Sobic002G380100 Sobic002G380100 Sobic008G125100--Sobic002G380100 Sobic009G122900--Sobic003G304800 Sobic003G331000 Sobic003G331000 Sobic009G122900--Sobic003G331000 Sobic009G122900--Sobic008G125100 Sobic001G242300 Sobic001G242300 Sobic009G122900--Sobic001G242300 Sobic003G028400 Sobic003G028400 Sobic009G122900--Sobic003G028400 Sobic001G296800 Sobic001G296800 Sobic009G122900--Sobic001G296800 Sobic003G298900 Sobic003G298900 Sobic009G122900--Sobic003G298900 Sobic005G064100 Sobic005G064100 Sobic009G122900--Sobic005G064100 Sobic005G160200 Sobic005G160200 Sobic009G122900--Sobic005G160200 Sobic001G367100 Sobic001G367100 Sobic001G315400--Sobic001G367100 Sobic003G077500 Sobic003G077500 Sobic001G315400--Sobic003G077500 Sobic002G079100 Sobic002G079100 Sobic001G315400--Sobic002G079100 Sobic002G002100 Sobic002G002100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic001G315400--Sobic004G128200 Sobic004G227500 Sobic004G227500 Sobic001G315400--Sobic004G227500 Sobic001G395200 Sobic001G395200 Sobic001G315400--Sobic001G395200 Sobic008G056900 Sobic008G056900 Sobic007G000400--Sobic008G056900 Sobic001G522400 Sobic001G522400 Sobic007G000400--Sobic001G522400 Sobic006G242401 Sobic006G242401 Sobic007G000400--Sobic006G242401 Sobic001G045700 Sobic001G045700 Sobic007G000400--Sobic001G045700 Sobic009G096100 Sobic009G096100 Sobic007G000400--Sobic009G096100 Sobic007G000400--Sobic002G380100 Sobic007G000400--Sobic004G128200 Sobic003G163100 Sobic003G163100 Sobic007G000400--Sobic003G163100 Sobic010G143200 Sobic010G143200 Sobic007G000400--Sobic010G143200 Sobic005G199200 Sobic005G199200 Sobic004G128200--Sobic005G199200 Sobic004G128200--Sobic001G367100 Sobic010G279900 Sobic010G279900 Sobic004G128200--Sobic010G279900 Sobic004G128200--Sobic001G315400 Sobic003G409200 Sobic003G409200 Sobic004G128200--Sobic003G409200 Sobic001G090300 Sobic001G090300 Sobic004G128200--Sobic001G090300 Sobic002G145800 Sobic002G145800 Sobic004G128200--Sobic002G145800 Sobic007G183300 Sobic007G183300 Sobic004G128200--Sobic007G183300 Sobic008G017100 Sobic008G017100 Sobic004G128200--Sobic008G017100 Sobic004G015700 Sobic004G015700 Sobic001G236800--Sobic004G015700 Sobic002G064400 Sobic002G064400 Sobic001G236800--Sobic002G064400 Sobic001G142400 Sobic001G142400 Sobic001G236800--Sobic001G142400 Sobic001G215300 Sobic001G215300 Sobic001G236800--Sobic001G215300 Sobic007G206100 Sobic007G206100 Sobic001G236800--Sobic007G206100 Sobic008G008500 Sobic008G008500 Sobic001G236800--Sobic008G008500 Sobic004G151900 Sobic004G151900 Sobic001G236800--Sobic004G151900 Sobic004G246800 Sobic004G246800 Sobic001G236800--Sobic004G246800 Sobic010G157700 Sobic010G157700 Sobic001G236800--Sobic010G157700 Sobic003G304800--Sobic009G122900 Sobic007G010200 Sobic007G010200 Sobic003G304800--Sobic007G010200 Sobic001G472100 Sobic001G472100 Sobic003G304800--Sobic001G472100 Sobic008G112100 Sobic008G112100 Sobic003G304800--Sobic008G112100 Sobic003G304800--Sobic003G331000 Sobic007G036800 Sobic007G036800 Sobic003G304800--Sobic007G036800 Sobic009G060400 Sobic009G060400 Sobic003G304800--Sobic009G060400 Sobic003G304800--Sobic005G160200 Sobic001G425200 Sobic001G425200 Sobic003G304800--Sobic001G425200 Sobic001G115500 Sobic001G115500 Sobic007G172600--Sobic001G115500 Sobic007G172600--Sobic008G125100 Sobic001G471600 Sobic001G471600 Sobic007G172600--Sobic001G471600 Sobic008G135701 Sobic008G135701 Sobic007G172600--Sobic008G135701 Sobic002G317600 Sobic002G317600 Sobic007G172600--Sobic002G317600 Sobic008G083400 Sobic008G083400 Sobic007G172600--Sobic008G083400 Sobic007G172600--Sobic009G122900 Sobic004G067400 Sobic004G067400 Sobic007G172600--Sobic004G067400 Sobic001G469200 Sobic001G469200 Sobic007G172600--Sobic001G469200 Sobic006G140600 Sobic006G140600 Sobic004G178400--Sobic006G140600 Sobic004G178400--Sobic004G128200 Sobic004G178400--Sobic008G125100 Sobic004G178400--Sobic003G077500 Sobic008G088842 Sobic008G088842 Sobic004G178400--Sobic008G088842 Sobic002G143200 Sobic002G143200 Sobic004G178400--Sobic002G143200 Sobic003G023400 Sobic003G023400 Sobic004G178400--Sobic003G023400 Sobic001G253200 Sobic001G253200 Sobic004G178400--Sobic001G253200 Sobic008G190500 Sobic008G190500 Sobic004G178400--Sobic008G190500 Sobic002G380100--Sobic002G079100 Sobic004G119400 Sobic004G119400 Sobic002G380100--Sobic004G119400 Sobic002G380100--Sobic008G017100 Sobic006G111200 Sobic006G111200 Sobic002G380100--Sobic006G111200 Sobic001G448100 Sobic001G448100 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic002G380100--Sobic009G096100
Octagon: transcription factors


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