Gene annotation
Transcriptome id Sobic.009G096100.5,Sobic.009G096100.6,Sobic.009G096100.3,Sobic.009G096100.1,Sobic.009G096100.4
Synonym RTL2, Sb09g013160, ATRTL2
Functional annotation endoribonuclease Dicer, putative, expressed
UniProt A0A1Z5R1U1 , A0A1B6P7R5 , A0A1Z5R2T6 , A0A1Z5R1T7 , C5YVU2
Pfam PF00035 PF14622 PF00636 PF00035 PF00035 PF00636 PF00636
Panther DB PTHR14950 PTHR14950:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006396; RNA processing GO:0004525ribonuclease III activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G45150 : RNAse THREE-like protein 3,RNAse THREE-like protein 2
RAP-DB (Rice) LOC_Os05g18850.1 : endoribonuclease Dicer, putative, expressed
MaizeGDB (Corn) Zm00025a036946
Brachypodium KQK06966 , KQK06967 , KQK06968 , PNT71587
Barley HORVU7Hr1G115100.4 , HORVU7Hr1G115100.1 , HORVU7Hr1G115100.2
Wheat TraesCS7D02G504300 , TraesCS7B02G430900 , TraesCS7B02G430900 , TraesCS7D02G398600 , TraesCS7D02G398600 , TraesCS7D02G398600 , TraesCS7D02G502800 , TraesCS7A02G513400 , TraesCS7D02G504300 , TraesCS7D02G504300 , TraesCSU02G086900
Populus -


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cDNA sequences
Sobic.009G096100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
2 Sobic.002G192500 ES43 protein, putative, expressed -
3 Sobic.010G157700 expressed protein -
4 Sobic.001G485600 DAG protein, chloroplast precursor, putative, expressed -
5 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
6 Sobic.007G043900 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
7 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
8 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
9 Sobic.007G077700 expressed protein -
10 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
11 Sobic.001G087100 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome C, putative, expressed -
12 Sobic.007G000400 B3 DNA binding domain containing protein, expressed -
13 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
14 Sobic.009G055400 expressed protein -
15 Sobic.004G232000 TLD family protein, putative, expressed -
16 Sobic.008G081600 expressed protein -
17 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -
18 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
19 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
20 Sobic.001G252500 expressed protein -


Gene co-expression network
sample Sobic009G096100 Sobic009G096100 Sobic008G056900 Sobic008G056900 Sobic009G096100--Sobic008G056900 Sobic002G192500 Sobic002G192500 Sobic009G096100--Sobic002G192500 Sobic010G157700 Sobic010G157700 Sobic009G096100--Sobic010G157700 Sobic001G485600 Sobic001G485600 Sobic009G096100--Sobic001G485600 Sobic006G056000 Sobic006G056000 Sobic009G096100--Sobic006G056000 Sobic007G043900 Sobic007G043900 Sobic009G096100--Sobic007G043900 Sobic002G344500 Sobic002G344500 Sobic009G096100--Sobic002G344500 Sobic002G380100 Sobic002G380100 Sobic009G096100--Sobic002G380100 Sobic007G077700 Sobic007G077700 Sobic009G096100--Sobic007G077700 Sobic008G056900--Sobic009G096100 Sobic008G056900--Sobic001G485600 Sobic008G081600 Sobic008G081600 Sobic008G056900--Sobic008G081600 Sobic007G000400 Sobic007G000400 Sobic008G056900--Sobic007G000400 Sobic008G056900--Sobic002G344500 Sobic007G197400 Sobic007G197400 Sobic008G056900--Sobic007G197400 Sobic004G227100 Sobic004G227100 Sobic008G056900--Sobic004G227100 Sobic008G056900--Sobic007G077700 Sobic001G087100 Sobic001G087100 Sobic008G056900--Sobic001G087100 Sobic002G192500--Sobic009G096100 Sobic002G192500--Sobic006G056000 Sobic006G047100 Sobic006G047100 Sobic002G192500--Sobic006G047100 Sobic006G111200 Sobic006G111200 Sobic002G192500--Sobic006G111200 Sobic010G050700 Sobic010G050700 Sobic002G192500--Sobic010G050700 Sobic002G192500--Sobic007G043900 Sobic002G192500--Sobic008G056900 Sobic002G192500--Sobic001G087100 Sobic002G192500--Sobic001G485600 Sobic010G157700--Sobic009G096100 Sobic001G236800 Sobic001G236800 Sobic010G157700--Sobic001G236800 Sobic008G100400 Sobic008G100400 Sobic010G157700--Sobic008G100400 Sobic008G186500 Sobic008G186500 Sobic010G157700--Sobic008G186500 Sobic007G182600 Sobic007G182600 Sobic010G157700--Sobic007G182600 Sobic010G157700--Sobic002G380100 Sobic010G157700--Sobic007G000400 Sobic003G267000 Sobic003G267000 Sobic010G157700--Sobic003G267000 Sobic001G321400 Sobic001G321400 Sobic010G157700--Sobic001G321400 Sobic001G485600--Sobic008G056900 Sobic001G485600--Sobic009G096100 Sobic003G324100 Sobic003G324100 Sobic001G485600--Sobic003G324100 Sobic003G245900 Sobic003G245900 Sobic001G485600--Sobic003G245900 Sobic001G362300 Sobic001G362300 Sobic001G485600--Sobic001G362300 Sobic001G485600--Sobic008G081600 Sobic005G100900 Sobic005G100900 Sobic001G485600--Sobic005G100900 Sobic003G174800 Sobic003G174800 Sobic001G485600--Sobic003G174800 Sobic001G485600--Sobic007G197400 Sobic003G353600 Sobic003G353600 Sobic006G056000--Sobic003G353600 Sobic002G076000 Sobic002G076000 Sobic006G056000--Sobic002G076000 Sobic005G084100 Sobic005G084100 Sobic006G056000--Sobic005G084100 Sobic004G111000 Sobic004G111000 Sobic006G056000--Sobic004G111000 Sobic002G079100 Sobic002G079100 Sobic006G056000--Sobic002G079100 Sobic001G138400 Sobic001G138400 Sobic006G056000--Sobic001G138400 Sobic004G285000 Sobic004G285000 Sobic006G056000--Sobic004G285000 Sobic006G056000--Sobic006G047100 Sobic006G210000 Sobic006G210000 Sobic006G056000--Sobic006G210000 Sobic004G232000 Sobic004G232000 Sobic007G043900--Sobic004G232000 Sobic004G096500 Sobic004G096500 Sobic007G043900--Sobic004G096500 Sobic007G043900--Sobic006G056000 Sobic006G052300 Sobic006G052300 Sobic007G043900--Sobic006G052300 Sobic009G100050 Sobic009G100050 Sobic007G043900--Sobic009G100050 Sobic002G010800 Sobic002G010800 Sobic007G043900--Sobic002G010800 Sobic007G043900--Sobic009G096100 Sobic007G043900--Sobic001G087100 Sobic004G087600 Sobic004G087600 Sobic007G043900--Sobic004G087600 Sobic003G322200 Sobic003G322200 Sobic002G344500--Sobic003G322200 Sobic001G322600 Sobic001G322600 Sobic002G344500--Sobic001G322600 Sobic002G344500--Sobic008G056900 Sobic002G344500--Sobic009G096100 Sobic003G407600 Sobic003G407600 Sobic002G344500--Sobic003G407600 Sobic006G226300 Sobic006G226300 Sobic002G344500--Sobic006G226300 Sobic004G036700 Sobic004G036700 Sobic002G344500--Sobic004G036700 Sobic001G422500 Sobic001G422500 Sobic002G344500--Sobic001G422500 Sobic008G152300 Sobic008G152300 Sobic002G344500--Sobic008G152300 Sobic002G380100--Sobic002G079100 Sobic004G119400 Sobic004G119400 Sobic002G380100--Sobic004G119400 Sobic008G017100 Sobic008G017100 Sobic002G380100--Sobic008G017100 Sobic002G380100--Sobic006G111200 Sobic001G448100 Sobic001G448100 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic002G380100--Sobic010G050700 Sobic002G380100--Sobic009G096100 Sobic007G077700--Sobic009G096100 Sobic007G077700--Sobic008G056900 Sobic001G187800 Sobic001G187800 Sobic007G077700--Sobic001G187800 Sobic002G142600 Sobic002G142600 Sobic007G077700--Sobic002G142600 Sobic005G011000 Sobic005G011000 Sobic007G077700--Sobic005G011000 Sobic007G077700--Sobic002G380100 Sobic001G252500 Sobic001G252500 Sobic007G077700--Sobic001G252500 Sobic004G149800 Sobic004G149800 Sobic007G077700--Sobic004G149800 Sobic009G235200 Sobic009G235200 Sobic007G077700--Sobic009G235200
Octagon: transcription factors


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