Gene annotation
Transcriptome id Sobic.007G182600.2
Synonym Sb07g025280
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tetratricopeptide-like helical, putative, expressed
UniProt A0A1Z5RAH2
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF912
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G29230 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os12g38880.1 : tetratricopeptide-like helical, putative, expressed
MaizeGDB (Corn) Zm00025a005357
Brachypodium KQJ86159
Barley HORVU1Hr1G065970.2 , HORVU1Hr1G065970.3 , HORVU1Hr1G065970.1 , HORVU5Hr1G020040.4 , HORVU5Hr1G020040.1 , HORVU5Hr1G020040.3 , HORVU5Hr1G020040.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
3 Sobic.001G061600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidase M50, mammalian sterol-regulatory element binding protein, putative, expressed -
4 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
6 Sobic.008G147400 "responsible for fertility restoration, localized in anthers"(PubMedID : 20585750)@tetratricopeptide-like helical, putative, expressed -
7 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
8 Sobic.010G252000 - -
9 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
10 Sobic.003G420800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
11 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
12 Sobic.010G157700 expressed protein -
13 Sobic.001G437801 - K04077: groEL, chaperonin GroEL
14 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
15 Sobic.007G179600 pentatricopeptide, putative, expressed -
16 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
17 Sobic.001G228300 SAP domain containing protein, expressed -
18 Sobic.003G176200 - -
19 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
20 Sobic.001G391101 - -


Gene co-expression network
sample Sobic007G182600 Sobic007G182600 Sobic008G100400 Sobic008G100400 Sobic007G182600--Sobic008G100400 Sobic010G099300 Sobic010G099300 Sobic007G182600--Sobic010G099300 Sobic001G061600 Sobic001G061600 Sobic007G182600--Sobic001G061600 Sobic001G081300 Sobic001G081300 Sobic007G182600--Sobic001G081300 Sobic001G040600 Sobic001G040600 Sobic007G182600--Sobic001G040600 Sobic008G147400 Sobic008G147400 Sobic007G182600--Sobic008G147400 Sobic003G051500 Sobic003G051500 Sobic007G182600--Sobic003G051500 Sobic010G252000 Sobic010G252000 Sobic007G182600--Sobic010G252000 Sobic002G380100 Sobic002G380100 Sobic007G182600--Sobic002G380100 Sobic008G100400--Sobic007G182600 Sobic008G100400--Sobic001G040600 Sobic003G336500 Sobic003G336500 Sobic008G100400--Sobic003G336500 Sobic010G157700 Sobic010G157700 Sobic008G100400--Sobic010G157700 Sobic008G100400--Sobic008G147400 Sobic009G096100 Sobic009G096100 Sobic008G100400--Sobic009G096100 Sobic008G100400--Sobic001G081300 Sobic008G100400--Sobic010G099300 Sobic009G148200 Sobic009G148200 Sobic008G100400--Sobic009G148200 Sobic010G099300--Sobic001G040600 Sobic010G099300--Sobic007G182600 Sobic007G060600 Sobic007G060600 Sobic010G099300--Sobic007G060600 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic001G049800 Sobic001G049800 Sobic010G099300--Sobic001G049800 Sobic010G099300--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic010G099300--Sobic001G395300 Sobic006G271900 Sobic006G271900 Sobic010G099300--Sobic006G271900 Sobic004G151900 Sobic004G151900 Sobic001G061600--Sobic004G151900 Sobic003G042100 Sobic003G042100 Sobic001G061600--Sobic003G042100 Sobic006G062400 Sobic006G062400 Sobic001G061600--Sobic006G062400 Sobic007G154800 Sobic007G154800 Sobic001G061600--Sobic007G154800 Sobic001G061600--Sobic007G182600 Sobic008G021700 Sobic008G021700 Sobic001G061600--Sobic008G021700 Sobic001G164200 Sobic001G164200 Sobic001G061600--Sobic001G164200 Sobic003G029300 Sobic003G029300 Sobic001G061600--Sobic003G029300 Sobic002G232500 Sobic002G232500 Sobic001G061600--Sobic002G232500 Sobic001G391101 Sobic001G391101 Sobic001G081300--Sobic001G391101 Sobic007G179600 Sobic007G179600 Sobic001G081300--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic001G081300--Sobic001G347100 Sobic009G238700 Sobic009G238700 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic003G419800 Sobic003G419800 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic001G081300--Sobic010G099300 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic001G040600--Sobic010G099300 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic001G040600--Sobic003G051500 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic002G251800 Sobic002G251800 Sobic001G040600--Sobic002G251800 Sobic008G147400--Sobic007G182600 Sobic008G147400--Sobic008G100400 Sobic002G344500 Sobic002G344500 Sobic008G147400--Sobic002G344500 Sobic008G147400--Sobic010G099300 Sobic008G147400--Sobic003G051500 Sobic005G028300 Sobic005G028300 Sobic008G147400--Sobic005G028300 Sobic001G322600 Sobic001G322600 Sobic008G147400--Sobic001G322600 Sobic008G147400--Sobic009G096100 Sobic008G147400--Sobic003G419800 Sobic003G051500--Sobic001G391101 Sobic001G001200 Sobic001G001200 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic003G051500--Sobic007G182600 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic010G252000--Sobic007G182600 Sobic010G252000--Sobic001G164200 Sobic008G013900 Sobic008G013900 Sobic010G252000--Sobic008G013900 Sobic001G182300 Sobic001G182300 Sobic010G252000--Sobic001G182300 Sobic003G219000 Sobic003G219000 Sobic010G252000--Sobic003G219000 Sobic010G252000--Sobic001G061600 Sobic009G102800 Sobic009G102800 Sobic010G252000--Sobic009G102800 Sobic003G420800 Sobic003G420800 Sobic010G252000--Sobic003G420800 Sobic010G252000--Sobic010G099300 Sobic002G079100 Sobic002G079100 Sobic002G380100--Sobic002G079100 Sobic004G119400 Sobic004G119400 Sobic002G380100--Sobic004G119400 Sobic008G017100 Sobic008G017100 Sobic002G380100--Sobic008G017100 Sobic006G111200 Sobic006G111200 Sobic002G380100--Sobic006G111200 Sobic001G448100 Sobic001G448100 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic002G380100--Sobic009G096100
Octagon: transcription factors


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