Gene annotation
Transcriptome id Sobic.001G437801.1,Sobic.001G437801.2
Synonym -
Functional annotation -
UniProt A0A1Z5SAH0 , A0A1Z5SAF1
Pfam PF00118 PF00332 PF00332 PF00118
Panther DB PTHR11353 PTHR11353:SF81
NCBI CDD -
KEGG Orthology K04077; groEL, chaperonin GroEL
Gene Ontology GO:0005524; ATP binding GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G26230 : TCP-1/cpn60 chaperonin family protein
RAP-DB (Rice) ChrSy.fgenesh.mRNA.28 : expressed protein
MaizeGDB (Corn) Zm00025a011515 , Zm00025a031488 , Zm00025a001554 , Zm00025a001555 , Zm00025a045468 , Zm00025a026758
Brachypodium KQJ99728 , KQK22621 , KQJ82827
Barley HORVU2Hr1G072890.8 , HORVU2Hr1G072890.9 , HORVU2Hr1G072890.2 , HORVU2Hr1G072890.3 , HORVU2Hr1G072890.1 , HORVU2Hr1G072890.6 , HORVU2Hr1G072890.7 , HORVU2Hr1G072890.4 , HORVU2Hr1G072890.5 , HORVU3Hr1G067280.8 , HORVU3Hr1G067280.9 , HORVU3Hr1G067280.1 , HORVU3Hr1G067280.3 , HORVU3Hr1G067280.4 , HORVU3Hr1G067280.5 , HORVU3Hr1G067280.6 , HORVU3Hr1G067280.7 , HORVU3Hr1G067280.10 , HORVU3Hr1G067280.11 , HORVU2Hr1G077410.33 , HORVU2Hr1G077410.32 , HORVU2Hr1G077410.31 , HORVU2Hr1G077410.30 , HORVU2Hr1G077410.36 , HORVU2Hr1G077410.35 , HORVU2Hr1G077410.34 , HORVU3Hr1G067280.2 , HORVU5Hr1G095380.2 , HORVU1Hr1G011260.1 , HORVU1Hr1G011210.1 , HORVU1Hr1G011260.2 , HORVU1Hr1G011100.1 , HORVU1Hr1G011100.2 , HORVU2Hr1G077410.20 , HORVU2Hr1G077410.21 , HORVU2Hr1G077410.22 , HORVU2Hr1G077410.23 , HORVU2Hr1G077410.24 , HORVU2Hr1G077410.26 , HORVU2Hr1G077410.27 , HORVU2Hr1G072890.10 , HORVU2Hr1G072890.11 , HORVU0Hr1G031910.1 , HORVU5Hr1G095380.1 , HORVU4Hr1G063240.7 , HORVU4Hr1G063240.6 , HORVU4Hr1G063240.5 , HORVU4Hr1G063240.4 , HORVU4Hr1G063240.3 , HORVU4Hr1G063240.2 , HORVU4Hr1G063240.8 , HORVU2Hr1G077410.18 , HORVU2Hr1G077410.15 , HORVU2Hr1G077410.14 , HORVU2Hr1G077410.17 , HORVU2Hr1G077410.16 , HORVU2Hr1G077410.11 , HORVU2Hr1G077410.10 , HORVU2Hr1G077410.13 , HORVU2Hr1G077410.12 , HORVU2Hr1G077410.9 , HORVU2Hr1G077410.8 , HORVU2Hr1G077410.1 , HORVU2Hr1G077410.3 , HORVU2Hr1G077410.2 , HORVU2Hr1G077410.5 , HORVU2Hr1G077410.4 , HORVU2Hr1G077410.7 , HORVU2Hr1G077410.6 , HORVU1Hr1G010910.1 , HORVU1Hr1G010910.2 , HORVU1Hr1G010910.3
Wheat TraesCS3B02G278400 , TraesCS2D02G292500 , TraesCS2D02G292500 , TraesCSU02G153100 , TraesCS2B02G311200 , TraesCS2B02G311200 , TraesCS2A02G294700 , TraesCS2A02G294700 , TraesCS7A02G069700 , TraesCS3D02G249500 , TraesCS3D02G249500 , TraesCS7D02G065400 , TraesCS2B02G328500 , TraesCS2B02G328500 , TraesCS2B02G328500 , TraesCS2A02G311700 , TraesCS2A02G311700 , TraesCS2A02G311700 , TraesCS2D02G310000 , TraesCS2D02G310000 , TraesCS2D02G310000 , TraesCS4B02G225100 , TraesCS5D02G400400 , TraesCS3A02G249500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
2 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
3 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.001G138000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thiamine biosynthesis protein thiC, putative, expressed K03147: phosphomethylpyrimidine synthase
5 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
6 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
7 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.001G228300 SAP domain containing protein, expressed -
9 Sobic.001G049800 DDT domain containing protein, putative, expressed -
10 Sobic.002G172600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional protein folD, putative, expressed -
11 Sobic.002G022800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX234 - F-box domain containing protein, expressed -
12 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
13 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
14 Sobic.004G070200 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metallo-beta-lactamase, putative, expressed -
15 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
16 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.002G243650 - K00784: ribonuclease Z
18 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
19 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
20 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G437801 Sobic001G437801 Sobic010G099300 Sobic010G099300 Sobic001G437801--Sobic010G099300 Sobic001G040600 Sobic001G040600 Sobic001G437801--Sobic001G040600 Sobic001G395300 Sobic001G395300 Sobic001G437801--Sobic001G395300 Sobic001G138000 Sobic001G138000 Sobic001G437801--Sobic001G138000 Sobic007G182600 Sobic007G182600 Sobic001G437801--Sobic007G182600 Sobic003G030400 Sobic003G030400 Sobic001G437801--Sobic003G030400 Sobic001G368300 Sobic001G368300 Sobic001G437801--Sobic001G368300 Sobic001G228300 Sobic001G228300 Sobic001G437801--Sobic001G228300 Sobic001G049800 Sobic001G049800 Sobic001G437801--Sobic001G049800 Sobic010G099300--Sobic001G040600 Sobic010G099300--Sobic007G182600 Sobic007G060600 Sobic007G060600 Sobic010G099300--Sobic007G060600 Sobic001G081300 Sobic001G081300 Sobic010G099300--Sobic001G081300 Sobic010G099300--Sobic001G437801 Sobic010G099300--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic010G099300--Sobic003G051500 Sobic010G099300--Sobic001G395300 Sobic006G271900 Sobic006G271900 Sobic010G099300--Sobic006G271900 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic002G251800 Sobic002G251800 Sobic001G040600--Sobic002G251800 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic002G404900 Sobic002G404900 Sobic001G395300--Sobic002G404900 Sobic001G395300--Sobic001G228300 Sobic006G237100 Sobic006G237100 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic002G140000 Sobic002G140000 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic007G116100 Sobic007G116100 Sobic001G395300--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic001G395300--Sobic010G027200 Sobic001G138000--Sobic001G228300 Sobic001G138000--Sobic001G395300 Sobic004G170600 Sobic004G170600 Sobic001G138000--Sobic004G170600 Sobic001G138000--Sobic001G437801 Sobic001G138000--Sobic006G263800 Sobic003G392000 Sobic003G392000 Sobic001G138000--Sobic003G392000 Sobic009G233800 Sobic009G233800 Sobic001G138000--Sobic009G233800 Sobic005G142900 Sobic005G142900 Sobic001G138000--Sobic005G142900 Sobic001G120000 Sobic001G120000 Sobic001G138000--Sobic001G120000 Sobic007G182600--Sobic008G100400 Sobic007G182600--Sobic010G099300 Sobic001G061600 Sobic001G061600 Sobic007G182600--Sobic001G061600 Sobic007G182600--Sobic001G081300 Sobic007G182600--Sobic001G040600 Sobic008G147400 Sobic008G147400 Sobic007G182600--Sobic008G147400 Sobic007G182600--Sobic003G051500 Sobic010G252000 Sobic010G252000 Sobic007G182600--Sobic010G252000 Sobic002G380100 Sobic002G380100 Sobic007G182600--Sobic002G380100 Sobic003G222600 Sobic003G222600 Sobic003G030400--Sobic003G222600 Sobic008G148400 Sobic008G148400 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic001G076200 Sobic001G076200 Sobic003G030400--Sobic001G076200 Sobic009G238100 Sobic009G238100 Sobic003G030400--Sobic009G238100 Sobic003G030400--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic003G030400--Sobic001G114400 Sobic004G070200 Sobic004G070200 Sobic003G030400--Sobic004G070200 Sobic004G249500 Sobic004G249500 Sobic003G030400--Sobic004G249500 Sobic006G111200 Sobic006G111200 Sobic001G368300--Sobic006G111200 Sobic001G453500 Sobic001G453500 Sobic001G368300--Sobic001G453500 Sobic001G368300--Sobic007G060600 Sobic004G027300 Sobic004G027300 Sobic001G368300--Sobic004G027300 Sobic001G368300--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic001G368300--Sobic007G059700 Sobic009G148200 Sobic009G148200 Sobic001G368300--Sobic009G148200 Sobic006G273900 Sobic006G273900 Sobic001G368300--Sobic006G273900 Sobic003G436600 Sobic003G436600 Sobic001G368300--Sobic003G436600 Sobic001G228300--Sobic001G395300 Sobic002G045700 Sobic002G045700 Sobic001G228300--Sobic002G045700 Sobic001G228300--Sobic001G138000 Sobic001G228300--Sobic006G263800 Sobic001G228300--Sobic003G392000 Sobic001G228300--Sobic007G116100 Sobic001G228300--Sobic002G140000 Sobic003G283100 Sobic003G283100 Sobic001G228300--Sobic003G283100 Sobic006G110200 Sobic006G110200 Sobic001G228300--Sobic006G110200 Sobic001G049800--Sobic007G060600 Sobic004G151000 Sobic004G151000 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900
Octagon: transcription factors


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