Gene annotation
Transcriptome id Sobic.001G061600.1
Synonym Sb01g005580, EGY1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
peptidase M50, mammalian sterol-regulatory element binding protein, putative, expressed
UniProt C5WY30
Pfam PF02163
Panther DB PTHR31412 PTHR31412:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004222metalloendopeptidase activity


Orthologs (automatic annotation)
TAIR AT5G35220 : Peptidase M50 family protein
RAP-DB (Rice) LOC_Os03g57840.1 : peptidase M50, mammalian sterol-regulatory element binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a016591 , Zm00025a008516
Brachypodium KQK12803
Barley HORVU5Hr1G104160.3 , HORVU5Hr1G104160.2 , HORVU5Hr1G104160.1 , HORVU5Hr1G104160.4
Wheat TraesCS5B02G431300 , TraesCS5B02G431300 , TraesCS5A02G429300 , TraesCS5A02G429300 , TraesCS5D02G437500
Populus -


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cDNA sequences
Sobic.001G061600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G151900 - -
2 Sobic.003G042100 MAR-binding filament-like protein 1, putative, expressed -
3 Sobic.006G062400 Leucine Rich Repeat family protein, expressed -
4 Sobic.007G154800 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
5 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
6 Sobic.008G021700 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
7 Sobic.001G164200 cytochrome P450, putative, expressed -
8 Sobic.003G029300 lachrymatory factor synthase, putative, expressed -
9 Sobic.002G232500 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.009G251300 endonuclease, putative, expressed -
11 Sobic.007G066050 - -
12 Sobic.008G068400 - -
13 Sobic.002G094500 cytochrome P450, putative, expressed -
14 Sobic.005G142900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.001G275800 peptide transporter PTR2, putative, expressed -
16 Sobic.003G176200 - -
17 Sobic.004G266300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
18 Sobic.001G236800 tRNA methyltransferase, putative, expressed K00927: PGK, phosphoglycerate kinase
19 Sobic.001G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed -
20 Sobic.004G193800 hydrolase, alpha/beta fold family domain containing protein, expressed K14759: isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase


Gene co-expression network
sample Sobic001G061600 Sobic001G061600 Sobic004G151900 Sobic004G151900 Sobic001G061600--Sobic004G151900 Sobic003G042100 Sobic003G042100 Sobic001G061600--Sobic003G042100 Sobic006G062400 Sobic006G062400 Sobic001G061600--Sobic006G062400 Sobic007G154800 Sobic007G154800 Sobic001G061600--Sobic007G154800 Sobic007G182600 Sobic007G182600 Sobic001G061600--Sobic007G182600 Sobic008G021700 Sobic008G021700 Sobic001G061600--Sobic008G021700 Sobic001G164200 Sobic001G164200 Sobic001G061600--Sobic001G164200 Sobic003G029300 Sobic003G029300 Sobic001G061600--Sobic003G029300 Sobic002G232500 Sobic002G232500 Sobic001G061600--Sobic002G232500 Sobic004G151900--Sobic008G021700 Sobic009G251300 Sobic009G251300 Sobic004G151900--Sobic009G251300 Sobic004G151900--Sobic001G061600 Sobic004G151900--Sobic007G154800 Sobic004G246800 Sobic004G246800 Sobic004G151900--Sobic004G246800 Sobic007G066050 Sobic007G066050 Sobic004G151900--Sobic007G066050 Sobic004G151900--Sobic003G029300 Sobic001G142400 Sobic001G142400 Sobic004G151900--Sobic001G142400 Sobic009G064766 Sobic009G064766 Sobic004G151900--Sobic009G064766 Sobic003G042100--Sobic001G061600 Sobic003G042100--Sobic008G021700 Sobic001G215300 Sobic001G215300 Sobic003G042100--Sobic001G215300 Sobic001G236800 Sobic001G236800 Sobic003G042100--Sobic001G236800 Sobic004G193800 Sobic004G193800 Sobic003G042100--Sobic004G193800 Sobic008G008500 Sobic008G008500 Sobic003G042100--Sobic008G008500 Sobic003G042100--Sobic003G029300 Sobic003G042100--Sobic009G251300 Sobic003G042100--Sobic007G154800 Sobic006G062400--Sobic007G154800 Sobic006G062400--Sobic003G029300 Sobic008G176732 Sobic008G176732 Sobic006G062400--Sobic008G176732 Sobic006G132200 Sobic006G132200 Sobic006G062400--Sobic006G132200 Sobic007G099500 Sobic007G099500 Sobic006G062400--Sobic007G099500 Sobic001G046600 Sobic001G046600 Sobic006G062400--Sobic001G046600 Sobic006G062400--Sobic001G061600 Sobic004G016500 Sobic004G016500 Sobic006G062400--Sobic004G016500 Sobic003G424100 Sobic003G424100 Sobic006G062400--Sobic003G424100 Sobic007G154800--Sobic003G029300 Sobic007G154800--Sobic006G062400 Sobic007G154800--Sobic004G151900 Sobic009G102800 Sobic009G102800 Sobic007G154800--Sobic009G102800 Sobic007G154800--Sobic007G066050 Sobic008G176666 Sobic008G176666 Sobic007G154800--Sobic008G176666 Sobic007G154800--Sobic008G176732 Sobic010G144100 Sobic010G144100 Sobic007G154800--Sobic010G144100 Sobic007G154800--Sobic001G061600 Sobic008G100400 Sobic008G100400 Sobic007G182600--Sobic008G100400 Sobic010G099300 Sobic010G099300 Sobic007G182600--Sobic010G099300 Sobic007G182600--Sobic001G061600 Sobic001G081300 Sobic001G081300 Sobic007G182600--Sobic001G081300 Sobic001G040600 Sobic001G040600 Sobic007G182600--Sobic001G040600 Sobic008G147400 Sobic008G147400 Sobic007G182600--Sobic008G147400 Sobic003G051500 Sobic003G051500 Sobic007G182600--Sobic003G051500 Sobic010G252000 Sobic010G252000 Sobic007G182600--Sobic010G252000 Sobic002G380100 Sobic002G380100 Sobic007G182600--Sobic002G380100 Sobic008G021700--Sobic004G151900 Sobic008G021700--Sobic009G251300 Sobic005G022800 Sobic005G022800 Sobic008G021700--Sobic005G022800 Sobic008G021700--Sobic004G246800 Sobic001G076200 Sobic001G076200 Sobic008G021700--Sobic001G076200 Sobic002G209600 Sobic002G209600 Sobic008G021700--Sobic002G209600 Sobic008G021700--Sobic001G142400 Sobic005G077933 Sobic005G077933 Sobic008G021700--Sobic005G077933 Sobic008G021700--Sobic001G061600 Sobic008G013900 Sobic008G013900 Sobic001G164200--Sobic008G013900 Sobic001G182300 Sobic001G182300 Sobic001G164200--Sobic001G182300 Sobic008G049000 Sobic008G049000 Sobic001G164200--Sobic008G049000 Sobic002G094500 Sobic002G094500 Sobic001G164200--Sobic002G094500 Sobic007G129401 Sobic007G129401 Sobic001G164200--Sobic007G129401 Sobic003G219000 Sobic003G219000 Sobic001G164200--Sobic003G219000 Sobic009G026400 Sobic009G026400 Sobic001G164200--Sobic009G026400 Sobic002G060500 Sobic002G060500 Sobic001G164200--Sobic002G060500 Sobic005G043400 Sobic005G043400 Sobic001G164200--Sobic005G043400 Sobic003G029300--Sobic007G154800 Sobic007G123200 Sobic007G123200 Sobic003G029300--Sobic007G123200 Sobic003G029300--Sobic009G102800 Sobic004G240900 Sobic004G240900 Sobic003G029300--Sobic004G240900 Sobic003G029300--Sobic004G193800 Sobic003G029300--Sobic004G151900 Sobic003G029300--Sobic006G062400 Sobic003G029300--Sobic004G016500 Sobic003G029300--Sobic001G046600 Sobic002G232500--Sobic001G061600 Sobic008G068400 Sobic008G068400 Sobic002G232500--Sobic008G068400 Sobic005G054600 Sobic005G054600 Sobic002G232500--Sobic005G054600 Sobic002G232500--Sobic007G154800 Sobic002G232500--Sobic006G062400 Sobic002G232500--Sobic006G132200 Sobic002G318900 Sobic002G318900 Sobic002G232500--Sobic002G318900 Sobic002G232500--Sobic004G240900 Sobic002G232500--Sobic003G029300
Octagon: transcription factors


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